scholarly journals CLMSVault: A Software Suite for Protein Cross-Linking Mass-Spectrometry Data Analysis and Visualization

2017 ◽  
Vol 16 (7) ◽  
pp. 2645-2652 ◽  
Author(s):  
Mathieu Courcelles ◽  
Jasmin Coulombe-Huntington ◽  
Émilie Cossette ◽  
Anne-Claude Gingras ◽  
Pierre Thibault ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Analysis ◽  
Mass Spectrometry Data ◽  
Cross Linking ◽  
Software Suite ◽  
Protein Cross Linking

MSDA, a proteomics software suite for in-depth Mass Spectrometry Data Analysis using grid computing

PROTEOMICS ◽  
2014 ◽  
Vol 14 (9) ◽  
pp. 1014-1019 ◽  
Author(s):  
Christine Carapito ◽  
Alexandre Burel ◽  
Patrick Guterl ◽  
Alexandre Walter ◽  
Fabrice Varrier ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Analysis ◽  
Grid Computing ◽  
Mass Spectrometry Data ◽  
Software Suite

scholarly journals ProXL (Protein Cross-Linking Database): A Platform for Analysis, Visualization, and Sharing of Protein Cross-Linking Mass Spectrometry Data

2016 ◽  
Vol 15 (8) ◽  
pp. 2863-2870 ◽  
Author(s):  
Michael Riffle ◽  
Daniel Jaschob ◽  
Alex Zelter ◽  
Trisha N. Davis
Keyword(s):  
Mass Spectrometry ◽  
Mass Spectrometry Data ◽  
Cross Linking ◽  
Protein Cross Linking

scholarly journals Glycan-protein cross-linking mass spectrometry reveals sialic acid-mediated protein networks on cell surfaces

2021 ◽  
Author(s):  
Yixuan Xie ◽  
Siyu Chen ◽  
Qiongyu Li ◽  
Ying Sheng ◽  
Michael R Alvarez ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Sialic Acid ◽  
Membrane Proteins ◽  
Cell Membranes ◽  
Sialic Acids ◽  
Cross Linking ◽  
Protein Networks ◽  
Cell Surfaces ◽  
Protein Cross Linking

A cross-linking method is developed to elucidate the glycan-mediated interactions between membrane proteins through sialic acids. The method provides previously unknown extensive glycomic interactions on cell membranes. The vast majority...

Advancements in capturing and mining mass spectrometry data are transforming natural products research

2021 ◽  
Author(s):  
Scott A. Jarmusch ◽  
Justin J. J. van der Hooft ◽  
Pieter C. Dorrestein ◽  
Alan K. Jarmusch
Keyword(s):  
Mass Spectrometry ◽  
Data Mining ◽  
Natural Products ◽  
Data Analysis ◽  
Community Participation ◽  
Mass Spectrometry Data ◽  
Metabolomics Data ◽  
Analysis Tools ◽  
Public Data ◽  
Potential Use

This review covers the current and potential use of mass spectrometry-based metabolomics data mining in natural products. Public data, metadata, databases and data analysis tools are critical. The value and success of data mining rely on community participation.

scholarly journals EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data

2015 ◽  
Vol 31 (19) ◽  
pp. 3198-3206 ◽  
Author(s):  
Chalini D. Wijetunge ◽  
Isaam Saeed ◽  
Berin A. Boughton ◽  
Jeffrey M. Spraggins ◽  
Richard M. Caprioli ◽  
...  
Keyword(s):  
Mass Spectrometry ◽  
Data Analysis ◽  
Imaging Mass Spectrometry ◽  
Mass Spectrometry Data ◽  
Peak Picking ◽  
Analysis Pipeline ◽  
Data Analysis Pipeline ◽  
Imaging Mass Spectrometry Data

Mass Spectrometry Data Analysis for Early Detection of Inherited Breast Cancer

2009 ◽  
pp. 21-28
Author(s):  
Francesco Baudi ◽  
Mario Cannataro ◽  
Rita Casadonte ◽  
Francesco Costanzo ◽  
Giovanni Cuda ◽  
...  
Keyword(s):  
Breast Cancer ◽  
Mass Spectrometry ◽  
Data Analysis ◽  
Early Detection ◽  
Mass Spectrometry Data ◽  
Inherited Breast Cancer

scholarly journals Differential Tandem Mass Spectrometry-Based Cross-Linker: A New Approach for High Confidence in Identifying Protein Cross-Linking

2016 ◽  
Vol 88 (20) ◽  
pp. 10215-10222 ◽  
Author(s):  
Jayanta K. Chakrabarty ◽  
Aishwarya G. Naik ◽  
Michael B. Fessler ◽  
Gerhard R. Munske ◽  
Saiful M. Chowdhury
Keyword(s):  
Mass Spectrometry ◽  
Tandem Mass Spectrometry ◽  
Cross Linking ◽  
Tandem Mass ◽  
High Confidence ◽  
New Approach ◽  
Cross Linker ◽  
Protein Cross Linking
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