Computational design and characterization of new thieno‐expanded tricyclic purine analogs

2018 ◽  
Vol 119 (8) ◽  
pp. e25870
Author(s):  
Laibin Zhang ◽  
Mei Wang ◽  
Mengmeng Zheng ◽  
Xiangmu Kong
2021 ◽  
Author(s):  
Dennis Reichert ◽  
Helena Schepers ◽  
Julian Simke ◽  
Horst Lechner ◽  
Wolfgang Dörner ◽  
...  

The spatial and temporal control of gene expression at the post-transcriptional level is essential in eukaryotic cells and developing multicellular organisms. In recent years optochemical and optogenetic tools have enabled...


Peptides ◽  
2018 ◽  
Vol 104 ◽  
pp. 1-6 ◽  
Author(s):  
Cody R. Kilar ◽  
Sivakumar Sekharan ◽  
Larysa Sautina ◽  
YanPeng Diao ◽  
Shahar Keinan ◽  
...  

2015 ◽  
Vol 112 (34) ◽  
pp. 10714-10719 ◽  
Author(s):  
Yun Mou ◽  
Po-Ssu Huang ◽  
Fang-Ciao Hsu ◽  
Shing-Jong Huang ◽  
Stephen L. Mayo

Homodimers are the most common type of protein assembly in nature and have distinct features compared with heterodimers and higher order oligomers. Understanding homodimer interactions at the atomic level is critical both for elucidating their biological mechanisms of action and for accurate modeling of complexes of unknown structure. Computation-based design of novel protein–protein interfaces can serve as a bottom-up method to further our understanding of protein interactions. Previous studies have demonstrated that the de novo design of homodimers can be achieved to atomic-level accuracy by β-strand assembly or through metal-mediated interactions. Here, we report the design and experimental characterization of a α-helix–mediated homodimer with C2 symmetry based on a monomeric Drosophila engrailed homeodomain scaffold. A solution NMR structure shows that the homodimer exhibits parallel helical packing similar to the design model. Because the mutations leading to dimer formation resulted in poor thermostability of the system, design success was facilitated by the introduction of independent thermostabilizing mutations into the scaffold. This two-step design approach, function and stabilization, is likely to be generally applicable, especially if the desired scaffold is of low thermostability.


2019 ◽  
Vol 51 (2) ◽  
pp. 337-344 ◽  
Author(s):  
Alvie Asuncion-Astronomo ◽  
Žiga Štancar ◽  
Tanja Goričanec ◽  
Luka Snoj

2012 ◽  
Vol 80 (10) ◽  
pp. 2426-2436 ◽  
Author(s):  
Chioko Nagao ◽  
Nozomi Izako ◽  
Shinji Soga ◽  
Samia Haseeb Khan ◽  
Shigeki Kawabata ◽  
...  

Antibiotics ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 442
Author(s):  
Valentina Straniero ◽  
Victor Sebastián-Pérez ◽  
Lorenzo Suigo ◽  
William Margolin ◽  
Andrea Casiraghi ◽  
...  

Multidrug resistant Staphylococcus aureus is a severe threat, responsible for most of the nosocomial infections globally. This resistant strain is associated with a 64% increase in death compared to the antibiotic-susceptible strain. The prokaryotic protein FtsZ and the cell division cycle have been validated as potential targets to exploit in the general battle against antibiotic resistance. Despite the discovery and development of several anti-FtsZ compounds, no FtsZ inhibitors are currently used in therapy. This work further develops benzodioxane-benzamide FtsZ inhibitors. We seek to find more potent compounds using computational studies, with encouraging predicted drug-like profiles. We report the synthesis and the characterization of novel promising derivatives that exhibit very low MICs towards both methicillin-susceptible and -resistant S. aureus, as well as another Gram positive species, Bacillus subtilis, while possessing good predicted physical-chemical properties in terms of solubility, permeability, and chemical and physical stability. In addition, we demonstrate by fluorescence microscopy that Z ring formation and FtsZ localization are strongly perturbed by our derivatives, thus validating the target.


Sign in / Sign up

Export Citation Format

Share Document