High-Resolution Copy Number Profiling by Array CGH Using DNA Isolated from Formalin-Fixed, Paraffin-Embedded Tissues

Genome-Wide, High-Resolution Detection of Copy Number, Loss of Heterozygosity, and Genotypes from Formalin-Fixed, Paraffin-Embedded Tumor Tissue Using Microarrays

Cancer Research ◽

10.1158/0008-5472.can-06-3597 ◽

2007 ◽

Vol 67 (6) ◽

pp. 2544-2551 ◽

Cited By ~ 53

Author(s):

Sharoni Jacobs ◽

Ella R. Thompson ◽

Yasuhito Nannya ◽

Go Yamamoto ◽

Raji Pillai ◽

...

Keyword(s):

High Resolution ◽

Loss Of Heterozygosity ◽

Copy Number ◽

Tumor Tissue ◽

Copy Number Loss ◽

Genome Wide ◽

Formalin Fixed Paraffin ◽

Formalin-fixed paraffin-embedded clinical tissues show spurious copy number changes in array-CGH profiles

Clinical Genetics ◽

10.1111/j.1399-0004.2007.00882.x ◽

2007 ◽

Vol 72 (5) ◽

pp. 441-447 ◽

Cited By ~ 33

Author(s):

EA Mc Sherry ◽

A Mc Goldrick ◽

EW Kay ◽

AM Hopkins ◽

WM Gallagher ◽

...

Keyword(s):

Copy Number ◽

Array Cgh ◽

Formalin Fixed Paraffin ◽

Copy Number Changes ◽

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens

Nucleic Acids Research ◽

10.1093/nar/gkq510 ◽

2010 ◽

Vol 38 (14) ◽

pp. e151-e151 ◽

Cited By ~ 86

Author(s):

Henry M. Wood ◽

Ornella Belvedere ◽

Caroline Conway ◽

Catherine Daly ◽

Rebecca Chalkley ◽

...

Keyword(s):

Next Generation Sequencing ◽

High Resolution ◽

Copy Number Variation ◽

Copy Number ◽

Multiplex Analysis ◽

Formalin Fixed Paraffin ◽

Number Variation ◽

Generation Sequencing ◽

Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue

Genome Medicine ◽

10.1186/s13073-016-0375-z ◽

2016 ◽

Vol 8 (1) ◽

Cited By ~ 18

Author(s):

Tanjina Kader ◽

David L. Goode ◽

Stephen Q. Wong ◽

Jacquie Connaughton ◽

Simone M. Rowley ◽

...

Keyword(s):

Whole Genome Sequencing ◽

Genome Sequencing ◽

Copy Number ◽

Tumor Tissue ◽

Whole Genome ◽

Copy Number Analysis ◽

Formalin Fixed Paraffin ◽

Low Coverage ◽

Copy number, loss of heterozygosity and amplification detection in formalin-fixed paraffin-embedded melanocytic lesions using molecular inversion probes

Cancer Genetics ◽

10.1016/j.cancergen.2011.08.010 ◽

2011 ◽

Vol 204 (8) ◽

pp. 473

Author(s):

Leslie R. Rowe ◽

Wells Chandler ◽

Mona Jahromi ◽

Joshua D. Schiffman ◽

Sarah T. South

Keyword(s):

Loss Of Heterozygosity ◽

Copy Number ◽

Copy Number Loss ◽

Melanocytic Lesions ◽

Formalin Fixed Paraffin ◽

Molecular Inversion Probes ◽

Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells

Laboratory Investigation ◽

10.1038/labinvest.3700441 ◽

2006 ◽

Vol 86 (9) ◽

pp. 968-978 ◽

Cited By ~ 61

Author(s):

Nicola A Johnson ◽

Rifat A Hamoudi ◽

Koichi Ichimura ◽

Lu Liu ◽

Danita M Pearson ◽

...

Keyword(s):

Array Cgh ◽

Formalin Fixed Paraffin ◽

Comprehensive Screening of Gene Copy Number Aberrations in Formalin-Fixed, Paraffin-Embedded Solid Tumors Using Molecular Inversion Probe–Based Single-Nucleotide Polymorphism Array

Journal of Molecular Diagnostics ◽

10.1016/j.jmoldx.2016.03.008 ◽

2016 ◽

Vol 18 (5) ◽

pp. 676-687 ◽

Cited By ~ 8

Author(s):

Rajesh R. Singh ◽

Meenakshi Mehrotra ◽

Hui Chen ◽

Alaa A. Almohammedsalim ◽

Ayesagul Sahin ◽

...

Keyword(s):

Copy Number ◽

Single Nucleotide Polymorphism Array ◽

Gene Copy Number ◽

Gene Copy ◽

Nucleotide Polymorphism ◽

Single Nucleotide ◽

Formalin Fixed Paraffin ◽

Molecular Inversion Probe ◽

High-resolution cDNA microarray CGH mapping of genomic imbalances in osteosarcoma using formalin-fixed paraffin-embedded tissue

Cytogenetic and Genome Research ◽

10.1159/000079574 ◽

2004 ◽

Vol 107 (1-2) ◽

pp. 77-82 ◽

Cited By ~ 31

Author(s):

M. Zielenska ◽

P. Marrano ◽

P. Thorner ◽

J. Pei ◽

B. Beheshti ◽

...

Keyword(s):

High Resolution ◽

Cdna Microarray ◽

Genomic Imbalances ◽

Formalin Fixed Paraffin ◽

Formalin Fixed ◽

Microarray Cgh

Data Analysis Considerations for Detecting Copy Number Changes in Formalin-Fixed, Paraffin-Embedded Tissues

Cold Spring Harbor Protocols ◽

10.1101/pdb.ip071761 ◽

2012 ◽

Vol 2012 (11) ◽

pp. pdb.ip071761-pdb.ip071761 ◽

Cited By ~ 1

Author(s):

S. Jacobs

Keyword(s):

Data Analysis ◽

Copy Number ◽

Formalin Fixed Paraffin ◽

Copy Number Changes ◽

Abstract 3734: Development of a nanostring copy number assay for a customized 55 gene panel using challenging formalin-fixed paraffin-embedded (ffpe) tumor samples

10.1158/1538-7445.am2014-3734 ◽

2014 ◽

Author(s):

Tingdong Tang ◽

Wenge Shi ◽

Loretta Hipolito ◽

Julie Mayer ◽

Jelveh Lameh ◽

...

Keyword(s):

Copy Number ◽

Gene Panel ◽

Formalin Fixed Paraffin ◽

Copy Number Assay ◽

Ffpe Tumor ◽