scholarly journals Automated Pancreas Segmentation Using Multi-institutional Collaborative Deep Learning

Author(s):  
Pochuan Wang ◽  
Chen Shen ◽  
Holger R. Roth ◽  
Dong Yang ◽  
Daguang Xu ◽  
...  
2021 ◽  
Author(s):  
Sang-Heon Lim ◽  
Young Jae Kim ◽  
Yeon-Ho Park ◽  
Doojin Kim ◽  
Kwang Gi Kim ◽  
...  

Abstract Pancreas segmentation is necessary for observing lesions, analyzing anatomical structures, and predicting patient prognosis. Therefore, various studies have designed segmentation models based on convolutional neural networks for pancreas segmentation. However, the deep learning approach is limited by a lack of data, and studies conducted on a large computed tomography dataset are scarce. Therefore, this study aims to perform deep-learning-based semantic segmentation on 1,006 participants and evaluate the automatic segmentation performance of the pancreas via four individual three-dimensional segmentation networks. In this study, we performed internal validation with 1,006 patients and external validation using the Cancer Imaging Archive (TCIA) pancreas dataset. We obtained mean precision, recall, and dice similarity coefficients of 0.869, 0.842, and 0.842, respectively, for internal validation via a relevant approach among the four deep learning networks. Using the external dataset, the deep learning network achieved mean precision, recall, and dice similarity coefficients of 0.779, 0.749, and 0.735, respectively. We expect that generalized deep-learning-based systems can assist clinical decisions by providing accurate pancreatic segmentation and quantitative information of the pancreas for abdominal computed tomography.


2020 ◽  
Vol 92 (4) ◽  
pp. 874-885.e3 ◽  
Author(s):  
Jun Zhang ◽  
Liangru Zhu ◽  
Liwen Yao ◽  
Xiangwu Ding ◽  
Di Chen ◽  
...  

2018 ◽  
Vol 12 (S4) ◽  
Author(s):  
Min Fu ◽  
Wenming Wu ◽  
Xiafei Hong ◽  
Qiuhua Liu ◽  
Jialin Jiang ◽  
...  

2021 ◽  
Vol 68 ◽  
pp. 101884
Author(s):  
Yue Zhang ◽  
Jiong Wu ◽  
Yilong Liu ◽  
Yifan Chen ◽  
Wei Chen ◽  
...  

2020 ◽  
Vol 10 (11) ◽  
pp. 2681-2685
Author(s):  
Zhaoxuan Gong ◽  
Wei Guo ◽  
Wei Zhou ◽  
Dazhe Zhao ◽  
Wenjun Tan ◽  
...  

A deep learning based active contour framework is proposed for pancreas segmentation. Data extension and fractional differential operation are firstly applied for pre-processing. Second, deep learning method is designed to acquire the initial contour of pancreas. Subsequently, an intensity constrained term is designed to stop the contours at the edges. The intensity constrained term is integrated into a variational active contour model with three terms. The accurate pancreas segmentation is obtained by the evolution of the active contour model. Our approach reaches high detection dice similarity coefficient (DSC) of 83% and sensitivity of 85% in a dataset containing 40 abdominal CT scans. Comparisons with other level set models provide evidence that the proposed method offers desirable performances.


2020 ◽  
Vol 10 (10) ◽  
pp. 3360
Author(s):  
Mizuho Nishio ◽  
Shunjiro Noguchi ◽  
Koji Fujimoto

Combinations of data augmentation methods and deep learning architectures for automatic pancreas segmentation on CT images are proposed and evaluated. Images from a public CT dataset of pancreas segmentation were used to evaluate the models. Baseline U-net and deep U-net were chosen for the deep learning models of pancreas segmentation. Methods of data augmentation included conventional methods, mixup, and random image cropping and patching (RICAP). Ten combinations of the deep learning models and the data augmentation methods were evaluated. Four-fold cross validation was performed to train and evaluate these models with data augmentation methods. The dice similarity coefficient (DSC) was calculated between automatic segmentation results and manually annotated labels and these were visually assessed by two radiologists. The performance of the deep U-net was better than that of the baseline U-net with mean DSC of 0.703–0.789 and 0.686–0.748, respectively. In both baseline U-net and deep U-net, the methods with data augmentation performed better than methods with no data augmentation, and mixup and RICAP were more useful than the conventional method. The best mean DSC was obtained using a combination of deep U-net, mixup, and RICAP, and the two radiologists scored the results from this model as good or perfect in 76 and 74 of the 82 cases.


2021 ◽  
Vol 2021 ◽  
pp. 1-10
Author(s):  
Meixiang Huang ◽  
Chongfei Huang ◽  
Jing Yuan ◽  
Dexing Kong

Accurate pancreas segmentation from 3D CT volumes is important for pancreas diseases therapy. It is challenging to accurately delineate the pancreas due to the poor intensity contrast and intrinsic large variations in volume, shape, and location. In this paper, we propose a semiautomated deformable U-Net, i.e., DUNet for the pancreas segmentation. The key innovation of our proposed method is a deformable convolution module, which adaptively adds learned offsets to each sampling position of 2D convolutional kernel to enhance feature representation. Combining deformable convolution module with U-Net enables our DUNet to flexibly capture pancreatic features and improve the geometric modeling capability of U-Net. Moreover, a nonlinear Dice-based loss function is designed to tackle the class-imbalanced problem in the pancreas segmentation. Experimental results show that our proposed method outperforms all comparison methods on the same NIH dataset.


2020 ◽  
Vol 27 (5) ◽  
pp. 689-695 ◽  
Author(s):  
Mohammad Hadi Bagheri ◽  
Holger Roth ◽  
William Kovacs ◽  
Jianhua Yao ◽  
Faraz Farhadi ◽  
...  

2020 ◽  
Vol 10 (11) ◽  
pp. 2681-2685
Author(s):  
Zhaoxuan Gong ◽  
Wei Guo ◽  
Wei Zhou ◽  
Dazhe Zhao ◽  
Wenjun Tan ◽  
...  

A deep learning based active contour framework is proposed for pancreas segmentation. Data extension and fractional differential operation are firstly applied for pre-processing. Second, deep learning method is designed to acquire the initial contour of pancreas. Subsequently, an intensity constrained term is designed to stop the contours at the edges. The intensity constrained term is integrated into a variational active contour model with three terms. The accurate pancreas segmentation is obtained by the evolution of the active contour model. Our approach reaches high detection dice similarity coefficient (DSC) of 83% and sensitivity of 85% in a dataset containing 40 abdominal CT scans. Comparisons with other level set models provide evidence that the proposed method offers desirable performances.


Sign in / Sign up

Export Citation Format

Share Document