Unraveling the Role of Nanobodies Tetrad on Their Folding and Stability Assisted by Machine and Deep Learning Algorithms

Author(s):  
Matheus Vitor Ferreira Ferraz ◽  
Wenny Camilla dos Santos Adan ◽  
Roberto Dias Lins
Author(s):  
Rajakumar Arul ◽  
Shakila Basheer ◽  
Asad Abbas ◽  
Ali Kashif Bashir

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Daniel Pinto dos Santos ◽  
Sebastian Brodehl ◽  
Bettina Baeßler ◽  
Gordon Arnhold ◽  
Thomas Dratsch ◽  
...  

Abstract Background Data used for training of deep learning networks usually needs large amounts of accurate labels. These labels are usually extracted from reports using natural language processing or by time-consuming manual review. The aim of this study was therefore to develop and evaluate a workflow for using data from structured reports as labels to be used in a deep learning application. Materials and methods We included all plain anteriorposterior radiographs of the ankle for which structured reports were available. A workflow was designed and implemented where a script was used to automatically retrieve, convert, and anonymize the respective radiographs of cases where fractures were either present or absent from the institution’s picture archiving and communication system (PACS). These images were then used to retrain a pretrained deep convolutional neural network. Finally, performance was evaluated on a set of previously unseen radiographs. Results Once implemented and configured, completion of the whole workflow took under 1 h. A total of 157 structured reports were retrieved from the reporting platform. For all structured reports, corresponding radiographs were successfully retrieved from the PACS and fed into the training process. On an unseen validation subset, the model showed a satisfactory performance with an area under the curve of 0.850 (95% CI 0.634–1.000) for detection of fractures. Conclusion We demonstrate that data obtained from structured reports written in clinical routine can be used to successfully train deep learning algorithms. This highlights the potential role of structured reporting for the future of radiology, especially in the context of deep learning.


Author(s):  
Lina F. Soualmia ◽  
Vincent Lafon ◽  
Stéfan J. Darmoni

In the context of the IA.TROMED project we intend to develop and evaluate original algorithmic methods that will rely on semantic enrichment of embeddings by combining new deep learning algorithms, such as models founded on transformers, and symbolic artificial intelligence. The documents’ embeddings, the graphs’ embeddings of biomedical concepts, and patients’ embeddings, all of them semantically enriched with aligned formal ontologies and semantic networks, will constitute a layer that will play the role of a queryable and searchable knowledge base that will supply the IA.TROMED’s clinical, predictive, and iatrogenic diagnosis support module.


2020 ◽  
Vol 2 ◽  
pp. 58-61 ◽  
Author(s):  
Syed Junaid ◽  
Asad Saeed ◽  
Zeili Yang ◽  
Thomas Micic ◽  
Rajesh Botchu

The advances in deep learning algorithms, exponential computing power, and availability of digital patient data like never before have led to the wave of interest and investment in artificial intelligence in health care. No radiology conference is complete without a substantial dedication to AI. Many radiology departments are keen to get involved but are unsure of where and how to begin. This short article provides a simple road map to aid departments to get involved with the technology, demystify key concepts, and pique an interest in the field. We have broken down the journey into seven steps; problem, team, data, kit, neural network, validation, and governance.


Author(s):  
Yuejun Liu ◽  
Yifei Xu ◽  
Xiangzheng Meng ◽  
Xuguang Wang ◽  
Tianxu Bai

Background: Medical imaging plays an important role in the diagnosis of thyroid diseases. In the field of machine learning, multiple dimensional deep learning algorithms are widely used in image classification and recognition, and have achieved great success. Objective: The method based on multiple dimensional deep learning is employed for the auxiliary diagnosis of thyroid diseases based on SPECT images. The performances of different deep learning models are evaluated and compared. Methods: Thyroid SPECT images are collected with three types, they are hyperthyroidism, normal and hypothyroidism. In the pre-processing, the region of interest of thyroid is segmented and the amount of data sample is expanded. Four CNN models, including CNN, Inception, VGG16 and RNN, are used to evaluate deep learning methods. Results: Deep learning based methods have good classification performance, the accuracy is 92.9%-96.2%, AUC is 97.8%-99.6%. VGG16 model has the best performance, the accuracy is 96.2% and AUC is 99.6%. Especially, the VGG16 model with a changing learning rate works best. Conclusion: The standard CNN, Inception, VGG16, and RNN four deep learning models are efficient for the classification of thyroid diseases with SPECT images. The accuracy of the assisted diagnostic method based on deep learning is higher than that of other methods reported in the literature.


2020 ◽  
Author(s):  
Siva Kumar Jonnavithula ◽  
Abhilash Kumar Jha ◽  
Modepalli Kavitha ◽  
Singaraju Srinivasulu

2021 ◽  
Vol 35 ◽  
pp. 100825
Author(s):  
Mahdi Panahi ◽  
Khabat Khosravi ◽  
Sajjad Ahmad ◽  
Somayeh Panahi ◽  
Salim Heddam ◽  
...  

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