The Role of Mcm2–7 in Replication Initiation

2016 ◽  
pp. 239-262
Author(s):  
Dirk Remus
Keyword(s):  
Replication Initiation

Role of DDK in Replication Initiation

2016 ◽  
pp. 279-296 ◽  
Author(s):  
Daniel Rossbach ◽  
Robert A. Sclafani
Keyword(s):  
Replication Initiation

Beyond DnaA: The Role of DNA Topology and DNA Methylation in Bacterial Replication Initiation

2014 ◽  
Vol 426 (12) ◽  
pp. 2269-2282 ◽  
Author(s):  
Rafał Donczew ◽  
Jolanta Zakrzewska-Czerwińska ◽  
Anna Zawilak-Pawlik
Keyword(s):  
Dna Methylation ◽  
Dna Topology ◽  
Replication Initiation ◽  
Bacterial Replication

scholarly journals Rules and Exceptions: The Role of Chromosomal ParB in DNA Segregation and Other Cellular Processes

2020 ◽  
Vol 8 (1) ◽  
pp. 105 ◽  
Author(s):  
Adam Kawalek ◽  
Pawel Wawrzyniak ◽  
Aneta Agnieszka Bartosik ◽  
Grazyna Jagura-Burdzy
Keyword(s):  
Bacterial Species ◽  
Regulation Of Gene Expression ◽  
Replication Initiation ◽  
Bacterial Cells ◽  
Dna Segregation ◽  
Cellular Processes ◽  
Chromosome Partitioning ◽  
Structural Maintenance Of Chromosome ◽  
Dna Partitioning

The segregation of newly replicated chromosomes in bacterial cells is a highly coordinated spatiotemporal process. In the majority of bacterial species, a tripartite ParAB-parS system, composed of an ATPase (ParA), a DNA-binding protein (ParB), and its target(s) parS sequence(s), facilitates the initial steps of chromosome partitioning. ParB nucleates around parS(s) located in the vicinity of newly replicated oriCs to form large nucleoprotein complexes, which are subsequently relocated by ParA to distal cellular compartments. In this review, we describe the role of ParB in various processes within bacterial cells, pointing out interspecies differences. We outline recent progress in understanding the ParB nucleoprotein complex formation and its role in DNA segregation, including ori positioning and anchoring, DNA condensation, and loading of the structural maintenance of chromosome (SMC) proteins. The auxiliary roles of ParBs in the control of chromosome replication initiation and cell division, as well as the regulation of gene expression, are discussed. Moreover, we catalog ParB interacting proteins. Overall, this work highlights how different bacterial species adapt the DNA partitioning ParAB-parS system to meet their specific requirements.

scholarly journals Dbf4-Dependent Kinase (DDK)-Mediated Proteolysis of CENP-A Prevents Mislocalization of CENP-A in Saccharomyces cerevisiae

2020 ◽  
Vol 10 (6) ◽  
pp. 2057-2068 ◽  
Author(s):  
Jessica R. Eisenstatt ◽  
Lars Boeckmann ◽  
Wei-Chun Au ◽  
Valerie Garcia ◽  
Levi Bursch ◽  
...  
Keyword(s):  
Dna Replication ◽  
Replication Initiation ◽  
Centromeric Chromatin ◽  
Dna Replication Initiation ◽  
Link Type ◽  
Genome Wide ◽  
A Genome ◽  
Evolutionarily Conserved ◽  
Histone H3 Variant

The evolutionarily conserved centromeric histone H3 variant (Cse4 in budding yeast, CENP-A in humans) is essential for faithful chromosome segregation. Mislocalization of CENP-A to non-centromeric chromatin contributes to chromosomal instability (CIN) in yeast, fly, and human cells and CENP-A is highly expressed and mislocalized in cancers. Defining mechanisms that prevent mislocalization of CENP-A is an area of active investigation. Ubiquitin-mediated proteolysis of overexpressed Cse4 (GALCSE4) by E3 ubiquitin ligases such as Psh1 prevents mislocalization of Cse4, and psh1Δ strains display synthetic dosage lethality (SDL) with GALCSE4. We previously performed a genome-wide screen and identified five alleles of CDC7 and DBF4 that encode the Dbf4-dependent kinase (DDK) complex, which regulates DNA replication initiation, among the top twelve hits that displayed SDL with GALCSE4. We determined that cdc7-7 strains exhibit defects in ubiquitin-mediated proteolysis of Cse4 and show mislocalization of Cse4. Mutation of MCM5 (mcm5-bob1) bypasses the requirement of Cdc7 for replication initiation and rescues replication defects in a cdc7-7 strain. We determined that mcm5-bob1 does not rescue the SDL and defects in proteolysis of GALCSE4 in a cdc7-7 strain, suggesting a DNA replication-independent role for Cdc7 in Cse4 proteolysis. The SDL phenotype, defects in ubiquitin-mediated proteolysis, and the mislocalization pattern of Cse4 in a cdc7-7 psh1Δ strain were similar to that of cdc7-7 and psh1Δ strains, suggesting that Cdc7 regulates Cse4 in a pathway that overlaps with Psh1. Our results define a DNA replication initiation-independent role of DDK as a regulator of Psh1-mediated proteolysis of Cse4 to prevent mislocalization of Cse4.

scholarly journals Xenopus Cdc7 executes its essential function early in S phase and is counteracted by checkpoint-regulated protein phosphatase 1

Open Biology ◽  
2014 ◽  
Vol 4 (1) ◽  
pp. 130138 ◽  
Author(s):  
Wei Theng Poh ◽  
Gaganmeet Singh Chadha ◽  
Peter J. Gillespie ◽  
Philipp Kaldis ◽  
J. Julian Blow
Keyword(s):  
Protein Phosphatase ◽  
Replication Timing ◽  
S Phase ◽  
Replication Initiation ◽  
Protein Phosphatase 1 ◽  
Checkpoint Kinases ◽  
Anti Cancer ◽  
Egg Extracts ◽  
Mcm Proteins

The initiation of DNA replication requires two protein kinases: cyclin-dependent kinase (Cdk) and Cdc7. Although S phase Cdk activity has been intensively studied, relatively little is known about how Cdc7 regulates progression through S phase. We have used a Cdc7 inhibitor, PHA-767491, to dissect the role of Cdc7 in Xenopus egg extracts. We show that hyperphosphorylation of mini-chromosome maintenance (MCM) proteins by Cdc7 is required for the initiation, but not for the elongation, of replication forks. Unlike Cdks, we demonstrate that Cdc7 executes its essential functions by phosphorylating MCM proteins at virtually all replication origins early in S phase and is not limiting for progression through the Xenopus replication timing programme. We demonstrate that protein phosphatase 1 (PP1) is recruited to chromatin and rapidly reverses Cdc7-mediated MCM hyperphosphorylation. Checkpoint kinases induced by DNA damage or replication inhibition promote the association of PP1 with chromatin and increase the rate of MCM dephosphorylation, thereby counteracting the previously completed Cdc7 functions and inhibiting replication initiation. This novel mechanism for regulating Cdc7 function provides an explanation for previous contradictory results concerning the control of Cdc7 by checkpoint kinases and has implications for the use of Cdc7 inhibitors as anti-cancer agents.

The role of replication initiation control in promoting survival of replication fork damage

2006 ◽  
Vol 60 (1) ◽  
pp. 229-239 ◽  
Author(s):  
Vincent A. Sutera ◽  
Susan T. Lovett
Keyword(s):  
Replication Fork ◽  
Replication Initiation

Initiation of polyoma virus origin-dependent DNA replication through STAT5 activation by human granulocyte-macrophage colony-stimulating factor

Blood ◽  
2001 ◽  
Vol 97 (5) ◽  
pp. 1266-1273 ◽  
Author(s):  
Sumiko Watanabe ◽  
Rong Zeng ◽  
Yutaka Aoki ◽  
Tohru Itoh ◽  
Ken-ichi Arai
Keyword(s):  
Dna Replication ◽  
Transcriptional Activation ◽  
Tandem Repeats ◽  
T Antigen ◽  
Replication Initiation ◽  
Macrophage Colony Stimulating Factor ◽  
Initiation Of Dna Replication ◽  
Macrophage Colony ◽  
Stimulating Factor

Several lines of evidence indicate that transcriptional activation is coupled with DNA replication initiation, but the nature of initiation of DNA replication in mammalian cells is unclear. Polyoma virus replicon is an excellent system to analyze the initiation of DNA replication in murine cells because its replication requires an enhancer, and all components of replication machinery, except for DNA helicase large T antigen, are supplied by host cells. This system was used to examine the role of signal transducer and activator of transcription (STAT5) in replication initiation of polyoma replicon in the mouse lymphoid cell line BA/F3. The plasmid with tandem repeats of consensus STAT5 binding sites followed by polyoma replication origin was replicated by stimulation with human granulocyte-macrophage colony-stimulating factor (hGM-CSF) in the presence of polyoma large T antigen in BA/F3 cells. Mutation analysis of the hGM-CSF receptor β subunit revealed that only the box1 region is essential, and the C-terminal tyrosine residues are dispensable for the activity. Addition of the tyrosine kinase inhibitor genistein suppressed this replication without affecting transcriptional activation of STAT5. Because deletion analysis of STAT5 indicates the importance of the C-terminal transcriptional activation domain of STAT5 for the initiation of replication, the role of this region in the activation of replication was examined with a GAL4–STAT5 fusion protein. GAL4–STAT5 activated replication of the plasmid containing tandem repeats of GAL4 binding sites and polyoma replication origin in BA/F3 cells. Mutation analysis of GAL4–STAT5 indicated that multiple serine residues coordinately have a role in activating replication. This is the first direct evidence indicating the potential involvement of STAT5 in replication.

scholarly journals The Role of the N-Terminal Domains of Bacterial Initiator DnaA in the Assembly and Regulation of the Bacterial Replication Initiation Complex

Genes ◽  
2017 ◽  
Vol 8 (5) ◽  
pp. 136 ◽  
Author(s):  
Anna Zawilak-Pawlik ◽  
Małgorzata Nowaczyk ◽  
Jolanta Zakrzewska-Czerwińska
Keyword(s):  
Replication Initiation ◽  
Initiation Complex ◽  
Bacterial Replication ◽  
Terminal Domains

scholarly journals The role of DDK and Treslin-MTBP in coordinating replication licensing and pre-Initiation Complex formation

2021 ◽  
Author(s):  
Ilaria Volpi ◽  
Peter J. Gillespie ◽  
Gaganmeet Singh Chadha ◽  
J. Julian Blow
Keyword(s):  
Dna Replication ◽  
Complex Formation ◽  
S Phase ◽  
Replication Initiation ◽  
Initiation Complex ◽  
Crucial Step ◽  
Egg Extract ◽  
Initiation Of Dna Replication ◽  
Rate Limiting

AbstractTreslin/Ticrr is required for the initiation of DNA replication and binds to MTBP (Mdm2 Binding Protein). Here we show that in Xenopus egg extract, MTBP forms an elongated tetramer with Treslin containing two molecules of each protein. Immunodepletion and add-back experiments show that Treslin-MTBP is rate-limiting for replication initiation. It is recruited onto chromatin before S phase starts and recruitment continues during S phase. We show that DDK activity both increases and strengthens the interaction of Treslin-MTBP with licensed chromatin. We also show that DDK activity cooperates with CDK activity to drive the interaction of Treslin-MTBP with TopBP1 which is a regulated crucial step in pre-Initiation Complex formation. These results suggest how DDK works together with CDKs to regulate Treslin-MTBP and plays a crucial in selecting which origins will undergo initiation.

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