3D-QSAR, molecular docking, and new compound design of pyrimidine derivatives as Src small molecule inhibitors

2019 ◽  
Vol 28 (8) ◽  
pp. 1246-1263
Author(s):  
Jun-wei Wang ◽  
Ya-ting Deng ◽  
Han Chu ◽  
Juan Wang ◽  
Yong Hu ◽  
...  
2021 ◽  
Vol 22 (23) ◽  
pp. 12745
Author(s):  
Swapnil P. Bhujbal ◽  
Jung-Mi Hah

Radiotherapy and chemotherapy are conventional cancer treatments. Around 60% of all patients who are diagnosed with cancer receive radio- or chemotherapy in combination with surgery during their disease. Only a few patients respond to the blockage of immune checkpoints alone, or in combination therapy, because their tumours might not be immunogenic. Under these circumstances, an increasing level of extracellular adenosine via the activation of ecto-5’-nucleotidase (CD73) and consequent adenosine receptor signalling is a typical mechanism that tumours use to evade immune surveillance. CD73 is responsible for the conversion of adenosine monophosphate to adenosine. CD73 is overexpressed in various tumour types. Hence, targetting CD73’s signalling is important for the reversal of adenosine-facilitated immune suppression. In this study, we selected a potent series of the non-nucleotide small molecule inhibitors of CD73. Molecular docking studies were performed in order to examine the binding mode of the inhibitors inside the active site of CD73 and 3D-QSAR was used to study the structure–activity relationship. The obtained CoMFA (q2 = 0.844, ONC = 5, r2 = 0.947) and CoMSIA (q2 = 0.804, ONC = 4, r2 = 0.954) models showed reasonable statistical values. The 3D-QSAR contour map analysis revealed useful structural characteristics that were needed to modify non-nucleotide small molecule inhibitors. We used the structural information from the overall docking and 3D-QSAR results to design new, potent CD73 non-nucleotide inhibitors. The newly designed CD73 inhibitors exhibited higher activity (predicted pIC50) than the most active compound of all of the derivatives that were selected for this study. Further experimental studies are needed in order to validate the new CD73 inhibitors.


2019 ◽  
Vol 133 ◽  
pp. 110758 ◽  
Author(s):  
Maiquan Li ◽  
Weisu Huang ◽  
Fan Jie ◽  
Mengmeng Wang ◽  
Yongheng Zhong ◽  
...  

Drug Research ◽  
2019 ◽  
Vol 69 (08) ◽  
pp. 451-457 ◽  
Author(s):  
Ogunleye Adewale Joseph ◽  
Kikiowo Babatomiwa ◽  
Adelakun Niyi ◽  
Omotuyi Olaposi ◽  
Inyang Olumide

Abstract Background BACE-1 is an aspartate protease that is responsible for the proteolysis of amyloid precursor proteins (APP) into beta-amyloid (Aβ), a neurotoxic peptide in patients with Alzheimer’s disease (AD). As such, BACE-1 is a prime pharmacological target in the control of Aβ in the brain and its inhibition will be a sound approach in AD therapy. Methods The computational pipeline which comprised molecular docking (MD), Quantitative Structure Activity Relationship (QSAR) modelling and Absorption, Distribution, Metabolism, Excretion and Toxicity (ADMET) studies enabled the prediction of molecular interaction and relative inhibitory potentials of the hit compound. Results and Discussion The current study reports a naturally sourced small molecule inhibitor of BACE1 (C000000956) which was obtained through a computational pipeline. Also, pharmacological constraints such as pH dependent activity of the enzyme and blood brain barrier permeation which have been associated with the efficacy of previous BACE-1 inhibitors were well catered for. Our results suggest that orally delivered C000000956 is a potential small molecule inhibitor of BACE-1 which may find usefulness in AD-therapy.


2014 ◽  
Vol 24 (2) ◽  
pp. 829-841 ◽  
Author(s):  
Ramakrishna Munnaluri ◽  
Sree Kanth Sivan ◽  
Vijjulatha Manga

2007 ◽  
Vol 50 (6) ◽  
pp. 1241-1253 ◽  
Author(s):  
Rino Ragno ◽  
Silvia Simeoni ◽  
Sabrina Castellano ◽  
Caterina Vicidomini ◽  
Antonello Mai ◽  
...  

RSC Advances ◽  
2017 ◽  
Vol 7 (17) ◽  
pp. 10353-10360 ◽  
Author(s):  
Ting-Ting Yao ◽  
Jiang-Feng Xie ◽  
Xing-Guo Liu ◽  
Jing-Li Cheng ◽  
Cheng-Yuan Zhu ◽  
...  

An integrated sequential virtual screening protocol by combining molecular docking and pharmacophore mapping was successfully constructed to identify novel small-molecule inhibitors of JAK2.


iScience ◽  
2021 ◽  
pp. 102544
Author(s):  
Joo-Leng Low ◽  
Weina Du ◽  
Tenzin Gocha ◽  
Gokce Oguz ◽  
Xiaoqian Zhang ◽  
...  

Sign in / Sign up

Export Citation Format

Share Document