Partitioning and physical mapping of wheat chromosome 3B and its homoeologue 3E in Thinopyrum elongatum by inducing homoeologous recombination

2020 ◽  
Vol 133 (4) ◽  
pp. 1277-1289
Author(s):  
Mingyi Zhang ◽  
Wei Zhang ◽  
Xianwen Zhu ◽  
Qing Sun ◽  
Shiaoman Chao ◽  
...  
Genome ◽  
2004 ◽  
Vol 47 (1) ◽  
pp. 36-45 ◽  
Author(s):  
A J Lukaszewski ◽  
K Rybka ◽  
V Korzun ◽  
S V Malyshev ◽  
B Lapinski ◽  
...  

Wide hybrids have been used in generating genetic maps of many plant species. In this study, genetic and physical mapping was performed on ph1b-induced recombinants of rye chromosome 2R in wheat (Triticum aestivum L.). All recombinants were single breakpoint translocations. Recombination 2RS–2BS was absent from the terminal and the pericentric regions and was distributed randomly along an intercalary segment covering approximately 65% of the arm's length. Such a distribution probably resulted from structural differences at the telomeres of 2RS and wheat 2BS arm that disrupted telomeric initiation of pairing. Recombination 2RL–2BL was confined to the terminal 25% of the arm's length. A genetic map of homoeologous recombination 2R–2B was generated using relative recombination frequencies and aligned with maps of chromosomes 2B and 2R based on homologous recombination. The alignment of the short arms showed a shift of homoeologous recombination toward the centromere. On the long arms, the distribution of homoeologous recombination was the same as that of homologous recombination in the distal halves of the maps, but the absence of multiple crossovers in homoeologous recombination eliminated the proximal half of the map. The results confirm that homoeologous recombination in wheat is based on single exchanges per arm, indicate that the distribution of these single homoeologous exchanges is similar to the distribution of the first (distal) crossovers in homologues, and suggest that successive crossovers in an arm generate specific portions of genetic maps. A difference in the distribution of recombination between the short and long arms indicates that the distal crossover localization in wheat is not dictated by a restricted distribution of DNA sequences capable of recombination but by the pattern of pairing initiation, and that can be affected by structural differences. Restriction of homoeologous recombination to single crossovers in the distal part of the genetic map complicates chromosome engineering efforts targeting genes in the proximal map regions.Key words: homoeologous recombination, genetic mapping, RFLP, RAPD, wheat, rye.


Biology ◽  
2021 ◽  
Vol 10 (4) ◽  
pp. 290
Author(s):  
Abdul Kader Alabdullah ◽  
Graham Moore ◽  
Azahara C. Martín

Although most flowering plants are polyploid, little is known of how the meiotic process evolves after polyploidisation to stabilise and preserve fertility. On wheat polyploidisation, the major meiotic gene ZIP4 on chromosome 3B duplicated onto 5B and diverged (TaZIP4-B2). TaZIP4-B2 was recently shown to promote homologous pairing, synapsis and crossover, and suppress homoeologous crossover. We therefore suspected that these meiotic stabilising effects could be important for preserving wheat fertility. A CRISPR Tazip4-B2 mutant was exploited to assess the contribution of the 5B duplicated ZIP4 copy in maintaining pollen viability and grain setting. Analysis demonstrated abnormalities in 56% of meiocytes in the Tazip4-B2 mutant, with micronuclei in 50% of tetrads, reduced size in 48% of pollen grains and a near 50% reduction in grain number. Further studies showed that most of the reduced grain number occurred when Tazip4-B2 mutant plants were pollinated with the less viable Tazip4-B2 mutant pollen rather than with wild type pollen, suggesting that the stabilising effect of TaZIP4-B2 on meiosis has a greater consequence in subsequent male, rather than female gametogenesis. These studies reveal the extraordinary value of the wheat chromosome 5B TaZIP4-B2 duplication to agriculture and human nutrition. Future studies should further investigate the role of TaZIP4-B2 on female fertility and assess whether different TaZIP4-B2 alleles exhibit variable effects on meiotic stabilisation and/or resistance to temperature change.


Genetica ◽  
2010 ◽  
Vol 138 (11-12) ◽  
pp. 1277-1296 ◽  
Author(s):  
Tong Geon Lee ◽  
Yong Jin Lee ◽  
Dae Yeon Kim ◽  
Yong Weon Seo

PLoS ONE ◽  
2013 ◽  
Vol 8 (4) ◽  
pp. e59542 ◽  
Author(s):  
Stuart J. Lucas ◽  
Bala Anı Akpınar ◽  
Melda Kantar ◽  
Zohar Weinstein ◽  
Fatma Aydınoğlu ◽  
...  

BMC Genomics ◽  
2018 ◽  
Vol 19 (S3) ◽  
Author(s):  
Elena A. Salina ◽  
Mikhail A. Nesterov ◽  
Zeev Frenkel ◽  
Antonina A. Kiseleva ◽  
Ekaterina M. Timonova ◽  
...  

1976 ◽  
Vol 18 (2) ◽  
pp. 271-279 ◽  
Author(s):  
Jan Dvořák

Chromosome pairing was studied in a number of hybrids involving a 56-chromosome wheat-Agropyron derivative, PW 327. PW 327 originated from the cross, Triticum aestivum cv. Chinese Spring (Chinese Spring × A. elongatum, 2n = 70). In hybrids between PW 327 and T. aestivum a number of multivalent chromosome associations were formed at metaphase I. These multivalents result from interchanges which occurred among wheat chromosomes 1A, 1D, 2A, 2D, 4D and 6D of PW 327. One chromosome of the Agropyron chromosome set of PW 327 occasionally pairs with wheat chromosome 3B. The rest of the Agropyron chromosomes present in PW 327 do not pair with the chromosomes of T. aestivum. It is proposed that the set of Agropyron chromosomes present in PW 327 is not an intact genome of decaploid A. elongatum but rather a modified synthetic genome combining chromosomes and/or chromosome segments from different genomes of the Agropyron parent. The incorporation of duplication-deletions into synthetic genomes of natural polyploids is discussed and it is shown that the set of Agropyron chromosomes which is present in PW 327 carries at least one such duplication-deletion. Pairing between chromosomes of diploid and decaploid A. elongatum was studied in a 56-chromosome hybrid from a cross between an amphiploid, T. aestivum × A. elongatum (2n = 14), and PW 327. It appeared that at least four chromosomes of these two Agropyrons occasionally paired with each other in this hybrid in which the diploidizing system of wheat was active. The relationship between chromosomes of diploid and decaploid A. elongatum is discussed.


2014 ◽  
Vol 15 (12) ◽  
Author(s):  
Josquin Daron ◽  
Natasha Glover ◽  
Lise Pingault ◽  
Sébastien Theil ◽  
Véronique Jamilloux ◽  
...  

Genetics ◽  
1997 ◽  
Vol 147 (2) ◽  
pp. 801-807 ◽  
Author(s):  
Tracie Foote ◽  
Michael Roberts ◽  
Nori Kurata ◽  
Takuji Sasaki ◽  
Graham Moore

Detailed physical mapping of markers from rice chromosome 9, and from syntenous (at the genetic level) regions of other cereal genomes, has resulted in rice yeast artificial chromosome (YAC) contigs spanning parts of rice 9. This physical mapping, together with comparative genetic mapping, has demonstrated that synteny has been largely maintained between the genomes of several cereals at the level of contiged YACs. Markers located in one region of rice chromosome 9 encompassed by the YAC contigs have exhibited restriction fragment length polymorphism (RFLP) using deletion lines for the Ph1 locus. This has allowed demarcation of the region of rice chromosome 9 syntenous with the ph1b and ph1c deletions in wheat chromosome 5B. A group of probes located in wheat homoeologous group 5 and barley chromosome 5H, however, have synteny with rice chromosomes other than 9. This suggests that the usefulness of comparative trait analysis and of the rice genome as a tool to facilitate gene isolation will differ from one region to the next, and implies that the rice genome is more ancestral in structure than those of the Triticeae.


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