Structural analysis of a hmg-coA-reductase pseudogene: insights into evolutionary processes affecting the hmgr gene family in allotetraploid cotton ( Gossypium hirsutum L.)

1998 ◽  
Vol 34 (4) ◽  
pp. 241-249 ◽  
Author(s):  
L. L. Loguercio ◽  
Thea A. Wilkins
Keyword(s):  
Structural Analysis ◽  
Gossypium Hirsutum ◽  
Gene Family ◽  
Evolutionary Processes ◽  
Gossypium Hirsutum L ◽  
Hmg Coa Reductase ◽  
Coa Reductase ◽  
Allotetraploid Cotton

scholarly journals Genome-wide analysis of GRAS transcription factor gene family in Gossypium hirsutum L.

BMC Genomics ◽  
2018 ◽  
Vol 19 (1) ◽  
Author(s):  
Bin Zhang ◽  
J. Liu ◽  
Zhao E. Yang ◽  
Er Y. Chen ◽  
Chao J. Zhang ◽  
...  
Keyword(s):  
Transcription Factor ◽  
Gossypium Hirsutum ◽  
Gene Family ◽  
Transcription Factor Gene ◽  
Gossypium Hirsutum L ◽  
Factor Gene ◽  
Genome Wide Analysis ◽  
Gras Transcription Factor ◽  
Genome Wide ◽  
Transcription Factor Gene Family

scholarly journals Characterization and Stress Response of the JmjC Domain-Containing Histone Demethylase Gene Family in the Allotetraploid Cotton Species Gossypium hirsutum

Plants ◽  
2020 ◽  
Vol 9 (11) ◽  
pp. 1617
Author(s):  
Jie Zhang ◽  
Junping Feng ◽  
Wei Liu ◽  
Zhongying Ren ◽  
Junjie Zhao ◽  
...  
Keyword(s):  
Abiotic Stress ◽  
Stress Response ◽  
Gossypium Hirsutum ◽  
Gene Family ◽  
Function Analysis ◽  
Histone Demethylase ◽  
Abiotic Stress Response ◽  
Cotton Species ◽  
Jmjc Domain ◽  
Allotetraploid Cotton

Histone modification is an important epigenetic modification that controls gene transcriptional regulation in eukaryotes. Histone methylation is accomplished by histone methyltransferase and can occur on two amino acid residues, arginine and lysine. JumonjiC (JmjC) domain-containing histone demethylase regulates gene transcription and chromatin structure by changing the methylation state of the lysine residue site and plays an important role in plant growth and development. In this study, we carried out genome-wide identification and comprehensive analysis of JmjC genes in the allotetraploid cotton species Gossypium hirsutum. In total, 50 JmjC genes were identified and in G. hirsutum, and 25 JmjC genes were identified in its two diploid progenitors, G. arboreum and G. raimondii, respectively. Phylogenetic analysis divided these JmjC genes into five subfamilies. A collinearity analysis of the two subgenomes of G. hirsutum and the genomes of G. arboreum and G. raimondii uncovered a one-to-one relationship between homologous genes of the JmjC gene family. Most homologs in the JmjC gene family between A and D subgenomes of G. hirsutum have similar exon-intron structures, which indicated that JmjC family genes were conserved after the polyploidization. All G. hirsutumJmjC genes were found to have a typical JmjC domain, and some genes also possess other special domains important for their function. Analysis of promoter regions revealed that cis-acting elements, such as those related to hormone and abiotic stress response, were enriched in G. hirsutum JmjC genes. According to a reverse transcription-quantitative polymerase chain reaction (RT-qPCR) analysis, most G. hirsutumJmjC genes had high abundance expression at developmental stages of fibers, suggesting that they might participate in cotton fiber development. In addition, some G. hirsutumJmjC genes were found to have different degrees of response to cold or osmotic stress, thus indicating their potential role in these types of abiotic stress response. Our results provide useful information for understanding the evolutionary history and biological function of JmjC genes in cotton.

scholarly journals Genome-wide identification and characterization of SnRK2 gene family in cotton (Gossypium hirsutum L.)

BMC Genetics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Zhao Liu ◽  
Xiaoyang Ge ◽  
Zuoren Yang ◽  
Chaojun Zhang ◽  
Ge Zhao ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Gossypium Hirsutum L ◽  
Genome Wide ◽  
Identification And Characterization

scholarly journals Identification and characterization of CONSTANS-like (COL) gene family in upland cotton (Gossypium hirsutum L.)

PLoS ONE ◽  
2017 ◽  
Vol 12 (6) ◽  
pp. e0179038 ◽  
Author(s):  
Darun Cai ◽  
Hui Liu ◽  
Na Sang ◽  
Xianzhong Huang
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Upland Cotton ◽  
Gossypium Hirsutum L ◽  
Identification And Characterization

Transcriptome-wide identification and stress properties of the 14-3-3 gene family in cotton (Gossypium hirsutum L.)

2011 ◽  
Vol 11 (4) ◽  
pp. 627-636 ◽  
Author(s):  
Guiling Sun ◽  
Fuliang Xie ◽  
Baohong Zhang
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Gossypium Hirsutum L

scholarly journals Genome-Wide Analysis of the NF-YB Gene Family in Gossypium hirsutum L. and Characterization of the Role of GhDNF-YB22 in Embryogenesis

2018 ◽  
Vol 19 (2) ◽  
pp. 483 ◽  
Author(s):  
Yanli Chen ◽  
Zhaoen Yang ◽  
Yanqing Xiao ◽  
Peng Wang ◽  
Ye Wang ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Gene Family ◽  
Gossypium Hirsutum L ◽  
Genome Wide Analysis ◽  
Genome Wide

Cloning and characterization of homeologous cellulose synthase catalytic subunit 2 genes from allotetraploid cotton (Gossypium hirsutum L.)

Gene ◽  
2012 ◽  
Vol 494 (2) ◽  
pp. 181-189 ◽  
Author(s):  
Hee Jin Kim ◽  
Barbara A. Triplett ◽  
Hong-Bin Zhang ◽  
Mi-Kyung Lee ◽  
Doug J. Hinchliffe ◽  
...  
Keyword(s):  
Gossypium Hirsutum ◽  
Cellulose Synthase ◽  
Catalytic Subunit ◽  
Gossypium Hirsutum L ◽  
Allotetraploid Cotton
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