Analysis of genetic variability in Couepia accessions using AFLP markers

2008 ◽  
Vol 56 (1) ◽  
pp. 77-83 ◽  
Author(s):  
Yomara Rozo ◽  
Lorena Quintero ◽  
Mauricio Parra ◽  
Carlos Rodríguez ◽  
Luz Marina Melgarejo
AoB Plants ◽  
2020 ◽  
Vol 12 (2) ◽  
Author(s):  
Efthalia Stathi ◽  
Konstantinos Kougioumoutzis ◽  
Eleni M Abraham ◽  
Panayiotis Trigas ◽  
Ioannis Ganopoulos ◽  
...  

Abstract The Mediterranean hot spot includes numerous endemic and socio-economically important plant species seriously threatened by climate change and habitat loss. In this study, the genetic diversity of five populations of Cicer graecum, an endangered endemic species from northern Peloponnisos, Greece and a wild relative of the cultivated Cicer arietinum, was investigated using inter-simple sequence repeats (ISSRs) and amplified fragment length polymorphism (AFLP) markers in order to determine levels and structure of genetic variability. Nei’s gene diversity by ISSR and AFLP markers indicated medium to high genetic diversity at the population level. Moreover, AMOVA results suggest that most of the variation exists within (93 % for AFLPs and 65 % for ISSRs), rather than among populations. Furthermore, Principal Component Analysis based on ISSRs positively correlated the genetic differentiation among the populations to the geographic distances, suggesting that the gene flow among distant populations is limited. The ecological adaptation of C. graecum populations was also investigated by correlation of their genetic diversity with certain environmental variables. Aridity arose as the dominant factor positively affecting the genetic diversity of C. graecum populations. We modelled the realized climatic niche of C. graecum in an ensemble forecasting scheme under three different global circulation models and two climate change scenarios. In all cases, a severe range contraction for C. graecum is projected, highlighting the high extinction risk that is probably going to face during the coming decades. These results could be a valuable tool towards the implementation of an integrated in situ and ex situ conservation scheme approach for activating management programmes for this endemic and threatened species.


Euphytica ◽  
2004 ◽  
Vol 136 (1) ◽  
pp. 93-102 ◽  
Author(s):  
Dunja Bandelj ◽  
Jernej Jakše ◽  
Branka Javornik

2006 ◽  
Vol 61 (5-6) ◽  
pp. 413-420 ◽  
Author(s):  
Arup Kumar Mukherjee ◽  
Laxmikanta Acharya ◽  
Pratap Chandra Panda ◽  
Trilochan Mohapatra

Random amplified polymorphic DNA (RAPD) and amplified fragment length polymorphism (AFLP) markers were used to assess the genetic diversity in 31 species of mangroves and mangrove associates. Four AFLP primer combinations resulted in the amplification of 840 bands with an average of 210 bands per primer combination and 11 RAPD primers yielded 319 bands with an average of 29 bands per primer. The percentage of polymorphism detected was too high indicating the high degree of genetic variability in mangrove taxa both at inter- and intra-generic levels. In the dendrogram, species belonging to a particular family/ genus, taxa inhabiting similar habitats or having similar adaptations tended to be together. There were exceptions too; as many unrelated species of mangroves form clusters. The intrafamilial classification and inter-relationships of genera in the family Rhizophoraceae could be confirmed by molecular analysis. Both the markers RAPD and AFLP were found equally informative and useful for a better understanding of the genetic variability and genome relationships among mangroves and their associated species.


2017 ◽  
Vol 109 ◽  
pp. 214-222 ◽  
Author(s):  
Paromik Bhattacharyya ◽  
Subhabrata Ghosh ◽  
Swati Sen Mandi ◽  
Suman Kumaria ◽  
Pramod Tandon

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