scholarly journals Evolving scenario of big data and Artificial Intelligence (AI) in drug discovery

Author(s):  
Manish Kumar Tripathi ◽  
Abhigyan Nath ◽  
Tej P. Singh ◽  
A. S. Ethayathulla ◽  
Punit Kaur
2019 ◽  
Vol 4 (4) ◽  
pp. 206-213 ◽  
Author(s):  
Benquan Liu ◽  
Huiqin He ◽  
Hongyi Luo ◽  
Tingting Zhang ◽  
Jingwei Jiang

Different kinds of biological databases publicly available nowadays provide us a goldmine of multidiscipline big data. The Cancer Genome Atlas is a cancer database including detailed information of many patients with cancer. DrugBank is a database including detailed information of approved, investigational and withdrawn drugs, as well as other nutraceutical and metabolite structures. PubChem is a chemical compound database including all commercially available compounds as well as other synthesisable compounds. Protein Data Bank is a crystal structure database including X-ray, cryo-EM and nuclear magnetic resonance protein three-dimensional structures as well as their ligands. On the other hand, artificial intelligence (AI) is playing an important role in the drug discovery progress. The integration of such big data and AI is making a great difference in the discovery of novel targeted drug. In this review, we focus on the currently available advanced methods for the discovery of highly effective lead compounds with great absorption, distribution, metabolism, excretion and toxicity properties.


2018 ◽  
Vol 20 (4) ◽  
Author(s):  
Yankang Jing ◽  
Yuemin Bian ◽  
Ziheng Hu ◽  
Lirong Wang ◽  
Xiang-Qun Xie

2018 ◽  
Vol 20 (3) ◽  
Author(s):  
Yankang Jing ◽  
Yuemin Bian ◽  
Ziheng Hu ◽  
Lirong Wang ◽  
Xiang-Qun Sean Xie

2021 ◽  
Vol 22 ◽  
Author(s):  
Anuraj Nayarisseri ◽  
Ravina Khandelwal ◽  
Poonam Tanwar ◽  
Maddala Madhavi ◽  
Diksha Sharma ◽  
...  

Abstract: Artificial Intelligence revolutionizes the drug development process that can quickly identify potential biologically active compounds from millions of candidate within a short span of time. The present review is an overview based on some applications of Machine Learning based tools such as GOLD, DeepPVP, LIBSVM, etc and the algorithms involved such as support vector machine (SVM), random forest (RF), decision trees and artificial neural networks (ANN) etc in the various stages of drug designing and development. These techniques can be employed in SNP discoveries, drug repurposing, ligand-based drug design (LBDD), Ligand-based Virtual Screening (LBVS) and Structure-based virtual screening (SBVS), Lead identification, quantitative structure-activity relationship (QSAR) modeling, and ADMET analysis. It is demonstrated that SVM exhibited better performance in indicating that the classification model will have great applications on human intesti-nal absorption (HIA) predictions. Successful cases have been reported which demonstrate the efficiency of SVM and RF model in identifying JFD00950 as a novel compound targeting against a colon cancer cell line, DLD-1 by inhibition of FEN1 cytotoxic and cleavage activity. Furthermore, a QSAR model was also used to predicts flavonoid inhibitory effects on AR activity as a potent treatment for diabetes mellitus (DM), using ANN. Hence, in the era of big data, ML approaches evolved as a powerful and efficient way to deal with the huge amounts of generated data from modern drug discovery in order to model small-molecule drugs, Gene Biomarkers, and identifying the novel drug targets for various diseases.


2020 ◽  
Vol 60 (1) ◽  
pp. 573-589 ◽  
Author(s):  
Hao Zhu

Due to the massive data sets available for drug candidates, modern drug discovery has advanced to the big data era. Central to this shift is the development of artificial intelligence approaches to implementing innovative modeling based on the dynamic, heterogeneous, and large nature of drug data sets. As a result, recently developed artificial intelligence approaches such as deep learning and relevant modeling studies provide new solutions to efficacy and safety evaluations of drug candidates based on big data modeling and analysis. The resulting models provided deep insights into the continuum from chemical structure to in vitro, in vivo, and clinical outcomes. The relevant novel data mining, curation, and management techniques provided critical support to recent modeling studies. In summary, the new advancement of artificial intelligence in the big data era has paved the road to future rational drug development and optimization, which will have a significant impact on drug discovery procedures and, eventually, public health.


2018 ◽  
Vol 20 (2) ◽  
pp. 1-5
Author(s):  
Sang-ho Jeon ◽  
Sung-yeul Yang ◽  
In-beom Shin ◽  
Dae-mok Son ◽  
Tae-han Kwon ◽  
...  

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