scholarly journals Characterization of three soybean landraces resistant to Asian soybean rust disease

2020 ◽  
Vol 40 (6) ◽  
Author(s):  
Luciano Nobuhiro Aoyagi ◽  
Yukie Muraki ◽  
Naoki Yamanaka
Keyword(s):  
Susceptible Variety ◽  
Soybean Rust ◽  
Resistance Locus ◽  
Chromosome 6 ◽  
Phakopsora Pachyrhizi ◽  
Rust Disease ◽  
Asian Soybean Rust ◽  
The World ◽  
Trait Locus

Abstract Phakopsora pachyrhizi is an obligatory biotrophic fungus that causes Asian soybean rust (ASR) disease. ASR control primarily involves chemical control and the use of resistant soybean cultivars carrying an Rpp (resistance to P. pachyrhizi) gene. This study aimed to characterize the ASR resistance of three soybean Asian landraces. By screening the world core collection (WC) of soybean, which consists of 80 varieties, three landraces were identified in Southeast Asia as resistant to ASR. Genetic mapping using the F2 population derived from a cross with an ASR-susceptible variety, BRS 184, indicated that KS 1034 (WC2) has ASR resistance conferred by a single dominant resistance gene, mapped on chromosome 18, in the same region where Rpp1 was mapped previously. The BRS 184 × WC61 (COL/THAI/1986/THAI-80) F2 population, on the other hand, showed an ASR resistance locus mapped by quantitative trait locus analysis on chromosome 6, in the region where the resistance conferred by PI 416764 Rpp3 resides, with a logarithm of the odds score peak at the same position as the marker, Satt079, while the BRS 184 × WC51 (HM 39) population showed the resistance to ASR allocated between Satt079 and Sat_263 markers, also in the region where Rpp3 was mapped previously. Both WC51 and WC61 have the same infection profile as FT-2 and PI 462312 when tested against the same ASR isolate panel. These three WCs can be used in MAS programs for introgression of Rpp1 and Rpp3 and the development of ASR-resistant cultivars in the breeding program.

scholarly journals Resistance to Asian soybean rust in soybean lines with the pyramided three Rpp genes

2013 ◽  
Vol 13 (1) ◽  
pp. 75-82 ◽  
Author(s):  
Naoki Yamanaka ◽  
Noelle G Lemos ◽  
Miori Uno ◽  
Hajime Akamatsu ◽  
Yuichi Yamaoka ◽  
...  
Keyword(s):  
Genetic Background ◽  
Susceptible Variety ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Soybean Line ◽  
Pathogen Population ◽  
Resistance Level ◽  
Asian Soybean Rust ◽  
High Level

In this study, the influence of genetic background on the resistance level of a soybean line carrying Rpp2, Rpp4, and Rpp5 was evaluated by backcrossing it with a susceptible variety. It was also evaluated eight lines which carry these Rpp genes against five Asian soybean rust (ASR) isolates, in order to determine the likely range of resistance against ASR isolates differing in pathogenicity. The results indicated that a high level of resistance against various ASR isolates could be retained in lines carrying the three Rpp genes in susceptible genetic backgrounds, although minor influences of plant genetic background and ASR pathogenicity to the ASR resistance could occur. Thus, lines with the pyramided three Rpp genes should be effective against a complex pathogen population consisting of diverse Phakopsora pachyrhizi isolates.

scholarly journals Molecular characterization of beta-tubulin from Phakopsora pachyrhizi, the causal agent of Asian soybean rust

2010 ◽  
Vol 33 (2) ◽  
pp. 354-358 ◽  
Author(s):  
Talles Eduardo Ferreira Maciel ◽  
Maíra Cristina Menezes Freire ◽  
Álvaro M.R. de Almeida ◽  
Luiz Orlando de Oliveira
Keyword(s):  
Molecular Characterization ◽  
Causal Agent ◽  
Soybean Rust ◽  
Phakopsora Pachyrhizi ◽  
Beta Tubulin ◽  
Asian Soybean Rust

scholarly journals Physics-informed deep learning characterizes morphodynamics of Asian soybean rust disease

2021 ◽  
Vol 12 (1) ◽  
Author(s):  
Henry Cavanagh ◽  
Andreas Mosbach ◽  
Gabriel Scalliet ◽  
Rob Lind ◽  
Robert G. Endres
Keyword(s):  
Tip Growth ◽  
Soybean Rust ◽  
Population Development ◽  
Phakopsora Pachyrhizi ◽  
Biophysical Modeling ◽  
Top Down ◽  
Rust Disease ◽  
Asian Soybean Rust ◽  
2D Space ◽  
Shape Changes

AbstractMedicines and agricultural biocides are often discovered using large phenotypic screens across hundreds of compounds, where visible effects of whole organisms are compared to gauge efficacy and possible modes of action. However, such analysis is often limited to human-defined and static features. Here, we introduce a novel framework that can characterize shape changes (morphodynamics) for cell-drug interactions directly from images, and use it to interpret perturbed development of Phakopsora pachyrhizi, the Asian soybean rust crop pathogen. We describe population development over a 2D space of shapes (morphospace) using two models with condition-dependent parameters: a top-down Fokker-Planck model of diffusive development over Waddington-type landscapes, and a bottom-up model of tip growth. We discover a variety of landscapes, describing phenotype transitions during growth, and identify possible perturbations in the tip growth machinery that cause this variation. This demonstrates a widely-applicable integration of unsupervised learning and biophysical modeling.

scholarly journals Identification and characterization of a new soybean promoter induced by Phakopsora pachyrhizi, the causal agent of Asian soybean rust

2020 ◽  
Author(s):  
Lisa Cabre ◽  
Stephane Peyrard ◽  
Catherine Sirven ◽  
Laurine Gilles ◽  
Bernard Pelissier ◽  
...  
Keyword(s):  
Transgenic Plants ◽  
Green Fluorescence Protein ◽  
Inducible Promoter ◽  
Soybean Rust ◽  
Limited Area ◽  
Phakopsora Pachyrhizi ◽  
Mechanical Wounding ◽  
Rust Disease ◽  
Asian Soybean Rust ◽  
Soybean Plants

ABSTRACTBackgroundPhakopsora pachyrhizi is a biotrophic fungal pathogen responsible for the Asian soybean rust disease causing important yield losses in tropical and subtropical soybean-producing countries. P. pachyrhizi triggers important transcriptional changes in soybean plants during infection, with several hundreds of genes being either up- or downregulated.ResultsBased on published transcriptomic data, we identified a predicted chitinase gene, referred to as GmCHIT1, that was upregulated in the first hours of infection. We first confirmed this early induction and showed that this gene was expressed as early as 8 hours after P. pachyrhizi inoculation. To investigate the promoter of GmCHIT1, transgenic soybean plants expressing the green fluorescence protein (GFP) under the control of the GmCHIT1 promoter were generated. Following inoculation of these transgenic plants with P. pachyrhizi, GFP fluorescence was detected in a limited area located around appressoria, the fungal penetration structures. Fluorescence was also observed after mechanical wounding whereas no variation in fluorescence of pGmCHIT1:GFP transgenic plants was detected after a treatment with an ethylene precursor or a methyl jasmonate analogue.ConclusionWe identified a soybean chitinase promoter exhibiting an early induction by P. pachyrhizi located in the first infected soybean leaf cells. Our results on the induction of GmCHIT1 promoter by P. pachyrhizi contribute to the identification of a new pathogen inducible promoter in soybean and beyond to the development of a strategy for the Asian soybean rust disease control using biotechnological approaches.

scholarly journals Identification and characterization of a new soybean promoter induced by Phakopsora pachyrhizi, the causal agent of Asian soybean rust

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
L. Cabre ◽  
S. Peyrard ◽  
C. Sirven ◽  
L. Gilles ◽  
B. Pelissier ◽  
...  
Keyword(s):  
Transgenic Plants ◽  
Green Fluorescence Protein ◽  
Inducible Promoter ◽  
Soybean Rust ◽  
Limited Area ◽  
Phakopsora Pachyrhizi ◽  
Mechanical Wounding ◽  
Rust Disease ◽  
Asian Soybean Rust ◽  
Soybean Plants

Abstract Background Phakopsora pachyrhizi is a biotrophic fungal pathogen responsible for the Asian soybean rust disease causing important yield losses in tropical and subtropical soybean-producing countries. P. pachyrhizi triggers important transcriptional changes in soybean plants during infection, with several hundreds of genes being either up- or downregulated. Results Based on published transcriptomic data, we identified a predicted chitinase gene, referred to as GmCHIT1, that was upregulated in the first hours of infection. We first confirmed this early induction and showed that this gene was expressed as early as 8 h after P. pachyrhizi inoculation. To investigate the promoter of GmCHIT1, transgenic soybean plants expressing the green fluorescence protein (GFP) under the control of the GmCHIT1 promoter were generated. Following inoculation of these transgenic plants with P. pachyrhizi, GFP fluorescence was detected in a limited area located around appressoria, the fungal penetration structures. Fluorescence was also observed after mechanical wounding whereas no variation in fluorescence of pGmCHIT1:GFP transgenic plants was detected after a treatment with an ethylene precursor or a methyl jasmonate analogue. Conclusion We identified a soybean chitinase promoter exhibiting an early induction by P. pachyrhizi located in the first infected soybean leaf cells. Our results on the induction of GmCHIT1 promoter by P. pachyrhizi contribute to the identification of a new pathogen inducible promoter in soybean and beyond to the development of a strategy for the Asian soybean rust disease control using biotechnological approaches.

scholarly journals Morphologic and Pathometric Characterization of the Asian Soybean Rust (Phakopsora pachyrhizi) in Santa Fe Province, Argentina

Plant Disease ◽  
2005 ◽  
Vol 89 (6) ◽  
pp. 684-684 ◽  
Author(s):  
R. N. Pioli ◽  
M. V. Cambursano ◽  
E. N. Morandi
Keyword(s):  
Growing Season ◽  
Brown Spot ◽  
Soybean Rust ◽  
Disease Spread ◽  
Phakopsora Pachyrhizi ◽  
Santa Fe ◽  
Asian Soybean Rust ◽  
Soybean Plants ◽  
Soybean Leaves

The Asian soybean rust caused by the fungus Phakopsora pachyrhizi was cited for the first time in Argentina during the 2002-2003 growing season (3). During 2003-2004, the disease spread to other northern provinces and was also observed in north-central Santa Fe, the main producing soybean province of the country. Because the disease appeared at the end of the crop growing season (late March to early April) it had little or no impact on crop yields. The objectives of this study were to characterize morphologically and pathometrically the disease on soybean and check the presence of P. pachyrhizi on volunteer soybean plants that could eventually carry the disease to the next growing season. The study was conducted in the San Justo Department, Santa Fe Province (between 30 and 31°S latitude), where the presence of the soybean rust was molecularly confirmed by Sistema Nacional Vigilancia y Monitoreo (on-line publication at www.sinavimo.gov.ar ). Three field locations were sampled and identified as M1, M2, and M3. Transversal cuts of soybean leaves through rust lesions and histo-pathological staining were used for micromor-phologic characterization of the developmental stages of P. pachyrhizi. The disease incidence was estimated as the proportion of affected soybean plants and leaves. Average severity, expressed as the percentage of leaf area affected, including chlorosis, was measured on the terminal leaflet of leaves sampled from the lower one-third of the canopy. Three replicates of 10 plants, randomly chosen, were used. The number of uredinia per square centimeter and per lesion (symptomatic foliar area showing chlorosis and necrosis caused by the fungus) was measured on the undersides of the sampled leaflets at ×40 magnification (1). Typical signs and symptoms of P. pachyrhizi coexisted on soybean leaves with brown spot (Septoria glycines), downy mildew (Peronospora manshurica), anthracnose (Colletotrichum truncatum), and blight and leaf spot (Cercospora kikuchii) and also with bacteria (Pseudomonas and Xanthomonas spp.). Uredinia and telia of the P. pachyrhizi cycle were observed. Uredinia were also observed on soybean petioles. The average size of urediniospores (n = 60) was 23.3 × 16.6 μm. Telia were located adjacent to the uredinia. These telia were dark and crusty with four stacked layers of teliospores. Rust incidence in plants was 100% for the three fields, while the incidence in leaves was 100% for M1 and M2 and 60% for M3. Average disease severity was 50.3, 25.6, and 14.8% for M1, M2, and M3, respectively. The mean number of uredinia per square centimeter was 327, 179, and 177, for M1, M2, and M3, respectively. The number of uredinia per lesion ranged from 1 to 6. P. pachyrhizi was also found on volunteer soybean plants that emerged shortly after harvest. On 40 leaflets, the foliar incidence was 25%, showing one to two lesions with one to two uredinios per leaflet (2). The volunteer soybean plants could constitute a potential early source of inoculum. References: (1) M. Marcchetti et al. Phytopathology. 66:461, 1976. (2) R. Pioli et al. La roya asiática en Santa. Fe, Arg. XII Cong. AAPRESID, II Sem. Internac. Soja, Arg. 283–290, 2004. (3) R. L. Rossi. Plant Dis. 87:102, 2003.

scholarly journals Inheritance and genetic mapping of resistance to Asian soybean rust in cultivar TMG 803

2014 ◽  
Vol 14 (4) ◽  
pp. 209-215 ◽  
Author(s):  
Éder Matsuo ◽  
Tuneo Sediyama ◽  
Sérgio Hermínio Brommonschenkel ◽  
Cosme Damião Cruz
Keyword(s):  
Linkage Group ◽  
Resistance Gene ◽  
Natural Infection ◽  
Soybean Rust ◽  
Resistance Locus ◽  
Phakopsora Pachyrhizi ◽  
Allelic Form ◽  
Complete Dominance ◽  
F2 Population ◽  
Asian Soybean Rust

This study analyzed the inheritance and identified microsatellite markers linked to the resistance gene to Phakopsora pachyrhizi in soybean cultivar TMG 803. Hybridization between the cultivars TMG 803 and BRS Valiosa RR was performed to obtain F1 progenies and the F2 population. The response of the parents 'TMG 803' and 'BRS Valiosa RR' to P. pachyrhizi was, respectively, resistant and susceptible, and among the 116 F2 plants,93 were resistant and 23 susceptible, under natural infection and field conditions. It was found that the resistance of cultivar TMG 803 is controlled by one gene with complete dominance, mapped as resistance locus Rpp4 of linkage group G. Of the 16 tested, one microsatellite marker, sc21_3420, was completely linked to the resistance gene (distance 0.0cM) and the favorable allelic form was present in cultivar TMG 803, which may therefore be useful in assisted selection in segregating populations.

scholarly journals Correction to: Characterization of three soybean landraces resistant to Asian soybean rust disease

2020 ◽  
Vol 40 (8) ◽  
Author(s):  
Luciano Nobuhiro Aoyagi ◽  
Yukie Muraki ◽  
Naoki Yamanaka
Keyword(s):  
Soybean Rust ◽  
Rust Disease ◽  
Asian Soybean Rust

scholarly journals Asian Soybean Rust: Incidence, Severity, and Morphological Characterization of Phakopsora pachyrhizi (Uredinia and Telia) in Argentina

Plant Disease ◽  
2005 ◽  
Vol 89 (1) ◽  
pp. 109-109 ◽  
Author(s):  
M. A. Carmona ◽  
M. E. Gally ◽  
S. E. Lopez
Keyword(s):  
Morphological Characterization ◽  
Northern Region ◽  
Soybean Rust ◽  
Limited Area ◽  
Growth Stages ◽  
Phakopsora Pachyrhizi ◽  
First Report ◽  
Telial Stage ◽  
Asian Soybean Rust

Asian soybean rust (ASR), caused by Phakopsora pachyrhizi, is the most destructive disease of soybean (Glycine max) in many areas of the world. ASR was first detected in Argentina during 2002 in a limited area in the northern region of the country (2). During the 2004 growing season, P. pachyrhizi spread rapidly throughout most soybean growing areas of northwestern and northeastern Argentina. ASR was also was found in some fields in Entre Ríos and Santa Fe provinces. In all areas, symptoms were expressed late in the 2004 season (growth stages R5.5 to R7) and yield losses were minimal. The objectives of this study were to quantify P. pachyrhizi infection in the canopy and morphologically characterize the fungus from fields where it had been previously detected by polymerase chain reaction (PCR) (3). Incidence (percentage of plants affected) and severity (percentage of leaf area affected, including chlorosis) were visually estimated for 10 plants arbitrarily collected (April 2004) from each of three fields located in Charata (Chacabuco), Chaco Province (Sample 1, collected in the R6 stage), La Paloma (Moreno), Santiago del Estero Province (Sample 2, stage R6 to R7), and Tolloche (Anta), Salta Province (Sample 3, stage R5.5). Disease assessments were made for the lower, middle, and upper canopy from 15 leaves per plant. The number of pustules per cm2 and uredinia per lesion were recorded from the undersides of central leaflets for each trifoliolate observed. Tissue sections were made to observe fructifications of P. pachyrhizi. Incidence of affected plants was 100% in all fields. Disease severity for Sample 1 was 45% (range 30 to 60%), 20% (10 to 30%), and 10% (5 to 20%) for the lower, middle, and upper canopy, respectively; for Sample 2: 60% (30 to 80%), 40% (25 to 50%), and 25% (15 to 40%) for the lower, middle, and upper canopy, respectively; and for Sample 3: 25% (10 to 50%), 15% (10 to 20%), and 10% (5 to 15%) for the lower, middle, and upper canopy, respectively. The number of pustules per cm2 for Sample 1 was 156/cm2 (range 88 to 200); Sample 2: 172/cm2 (128 to 232); and Sample 3: 120/cm2 (72 to 232). The number of uredinia per lesion for Sample 1 was 6 per lesion (range 1 to 15); Sample 2: 5.5 per lesion (1 to 13), and Sample 3: 2.8 per lesion (1 to 5). The two spore types that were commonly observed were urediniospores and teliospores. Telia were found on infected leaves mixed with uredinia in every sample. Urediniospores measured 16 to 22 μm (mean 18.5 μm) × 25 to 30 μm (mean 27 μm). Teliospores measured 8 to 11 μm (mean 9 μm) × 19 to 27 μm (mean 23.8 μm). Spores sizes are in the range described by Ono et al. (1). To our knowledge, this is the first report of epidemiological and morphological characterization of ASR in Argentina and the first report of the telial stage of P. pachyrhizi on soybean in South America. References: (1) Y. Ono et al. Mycol. Res. 96:825, 1992. (2) R. L. Rossi. Plant Dis 87:102, 2003. (3) SINAVIMO, Sistema Nacional Argentino de Vigilancia y Monitoreo de plagas. Roya de la soja: Resultados de la campaña 2003-2004. On-line publication. SENASA, 2004.

scholarly journals Morphologic and Pathometric Characterization of the Asian Soybean Rust (Phakopsora pachyrhizi) on Kudzu (Pueraria lobata) in Argentina

Plant Disease ◽  
2005 ◽  
Vol 89 (10) ◽  
pp. 1132-1132
Author(s):  
M. A. Carmona ◽  
C. Fortugno ◽  
P. L. Achával
Keyword(s):  
Soybean Rust ◽  
Pueraria Lobata ◽  
Phakopsora Pachyrhizi ◽  
Adverse Conditions ◽  
Asian Soybean Rust ◽  
On Line ◽  
Misiones Province ◽  
Average Size ◽  
Important Disease

Asian soybean rust (ASR) is a very important disease caused by Phakopsora pachyrhizi. The disease has emerged as a major threat to soybean production in South America since 2001. During the 2003-2004 growing season, P. pachyrhizi spread rapidly throughout most soybean-growing areas of northwestern and northeastern Argentina (1). One widespread naturalized host in the northeastern part of the country is kudzu (Pueraria lobata). Plants of severely infected kudzu were sampled during January 2005 in Cerro Azul (29°29′S Misiones Province) to quantify P. pachyrhizi infection and morphologically characterize the fungus in leaves. The number of lesions, uredinia per cm2, and uredinia per lesion were recorded from the undersides of 50 leaflets that were visually showing rust symptoms. The average number of lesions and uredinia per cm2 was 14 (4 to 22), and 24 (5 to 78), respectively. The number of uredinia per lesion was 3 (1 to 10). Twenty leaflets from the lower canopy averaged 55 (42 to 78) uredinia per cm2. The average size of urediniospores was 18.4 μm wide (12.5 to 22.5) and 22.7 μm long (17.5 to 26.3). Although important epidemics of ASR have not been registered on soybean crops in January (2) because of adverse conditions, the fungus was observed on kudzu plants. To our knowledge, this is the first report of morphologic and pathometric characterization of P. pachyrhizi on kudzu in Argentina. References: (1) M. A. Carmona et al Plant Dis. 89:109, 2005. (2) SINAVIMO, Sistema Nacional Argentino de Vigilancia y Monitoreo de plagas. Roya de la soja: Resultados de la campaña 2004-2005. On-line publication. SENASA, 2005.

Sign in / Sign up

Export Citation Format

Share Document