Experimental and computational characterization of the ferric uptake regulator from Aliivibrio salmonicida (Vibrio salmonicida)

2010 ◽  
Vol 48 (2) ◽  
pp. 174-183 ◽  
Author(s):  
Hege Lynum Pedersen ◽  
Rafi Ahmad ◽  
Ellen Kristin Riise ◽  
Hanna-Kirsti Schrøder Leiros ◽  
Stefan Hauglid ◽  
...  
1988 ◽  
Vol 11 (3) ◽  
pp. 197-205 ◽  
Author(s):  
K. HJELMELAND ◽  
K. STENSVAG ◽  
T. JORGENSEN ◽  
S. ESPELID

2000 ◽  
Vol 182 (21) ◽  
pp. 6264-6267 ◽  
Author(s):  
Ekaterina E. Zheleznova ◽  
Jorge H. Crosa ◽  
Richard G. Brennan

ABSTRACT The ferric uptake regulator, Fur, represses iron uptake and siderophore biosynthetic genes under iron-replete conditions. Here we report in vitro solution studies on Vibrio anguillarum Fur binding to the consensus 19-bp Escherichia coli iron box in the presence of several divalent metals. We found that V. anguillarum Fur binds the iron box in the presence of Mn2+, Co2+, Cd2+, and to a lesser extent Ni2+ but, unlike E. coli Fur, not in the presence of Zn2+. We also found that V. anguillarum Fur contains a structural zinc ion that is necessary yet alone is insufficient for DNA binding.


BioMetals ◽  
2014 ◽  
Vol 28 (1) ◽  
pp. 197-206 ◽  
Author(s):  
Ryan A. Barker ◽  
Jerrell Tisnado ◽  
Lisa A. Lambert ◽  
Astrid Gärdes ◽  
Mary W. Carrano ◽  
...  

BioMetals ◽  
2019 ◽  
Vol 32 (3) ◽  
pp. 491-500 ◽  
Author(s):  
Sabina Sarvan ◽  
Allison Yeung ◽  
François Charih ◽  
Alain Stintzi ◽  
Jean-François Couture

BioMetals ◽  
2020 ◽  
Vol 33 (4-5) ◽  
pp. 169-185
Author(s):  
Kristel Berg ◽  
Hege Lynum Pedersen ◽  
Ingar Leiros

Abstract Iron is an essential nutrient for bacteria, however its propensity to form toxic hydroxyl radicals at high intracellular concentrations, requires its acquisition to be tightly regulated. Ferric uptake regulator (Fur) is a metal-dependent DNA-binding protein that acts as a transcriptional regulator in maintaining iron metabolism in bacteria and is a highly interesting target in the design of new antibacterial drugs. Fur mutants have been shown to exhibit decreased virulence in infection models. The protein interacts specifically with DNA at binding sites designated as ‘Fur boxes’. In the present study, we have investigated the interaction between Fur from the fish pathogen Aliivibrio salmonicida (AsFur) and its target DNA using a combination of biochemical and in silico methods. A series of target DNA oligomers were designed based on analyses of Fur boxes from other species, and affinities assessed using electrophoretic mobility shift assay. Binding strengths were interpreted in the context of homology models of AsFur to gain molecular-level insight into binding specificity.


2007 ◽  
Vol 57 (12) ◽  
pp. 2823-2829 ◽  
Author(s):  
Henryk Urbanczyk ◽  
Jennifer C. Ast ◽  
Melissa J. Higgins ◽  
Jeremy Carson ◽  
Paul V. Dunlap

Four closely related species, Vibrio fischeri, Vibrio logei, Vibrio salmonicida and Vibrio wodanis, form a clade within the family Vibrionaceae; the taxonomic status and phylogenetic position of this clade have remained ambiguous for many years. To resolve this ambiguity, we tested these species against other species of the Vibrionaceae for phylogenetic and phenotypic differences. Sequence identities for the 16S rRNA gene were ≥97.4 % among members of the V. fischeri group, but were ≤95.5 % for members of this group in comparison with type species of other genera of the Vibrionaceae (i.e. Photobacterium and Vibrio, with which they overlap in G+C content, and Enterovibrio, Grimontia and Salinivibrio, with which they do not overlap in G+C content). Combined analysis of the recA, rpoA, pyrH, gyrB and 16S rRNA gene sequences revealed that the species of the V. fischeri group form a tightly clustered clade, distinct from these other genera. Furthermore, phenotypic traits differentiated the V. fischeri group from other genera of the Vibrionaceae, and a panel of 13 biochemical tests discriminated members of the V. fischeri group from type strains of Photobacterium and Vibrio. These results indicate that the four species of the V. fischeri group represent a lineage within the Vibrionaceae that is distinct from other genera. We therefore propose their reclassification in a new genus, Aliivibrio gen. nov. Aliivibrio is composed of four species: Aliivibrio fischeri comb. nov. (the type species) (type strain ATCC 7744T =CAIM 329T =CCUG 13450T =CIP 103206T =DSM 507T =LMG 4414T =NCIMB 1281T), Aliivibrio logei comb. nov. (type strain ATCC 29985T =CCUG 20283T =CIP 104991T =NCIMB 2252T), Aliivibrio salmonicida comb. nov. (type strain ATCC 43839T =CIP 103166T =LMG 14010T =NCIMB 2262T) and Aliivibrio wodanis comb. nov. (type strain ATCC BAA-104T =NCIMB 13582T =LMG 24053T).


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