scholarly journals Genetic diversity and genetic relationships in Hyacinthaceae in India using RAPD and SRAP markers

2013 ◽  
Vol 20 (1) ◽  
pp. 103-114 ◽  
Author(s):  
Tabassum Jehan ◽  
Amit Vashishtha ◽  
S. R. Yadav ◽  
Suman Lakhanpaul
Biologia ◽  
2015 ◽  
Vol 70 (4) ◽  
Author(s):  
Majid Talebi ◽  
Mehdi Rahimmalek ◽  
Mohsen Norouzi

AbstractThymus daenensis subsp. daenensis is an aromatic medicinal plant endemic to Iran and generally grows in high altitudes in Zagros Mountains range. Molecular markers provide valuable information about relative genetic relationships for facilitate breeding programs. Here, we used SRAP markers to estimate the genetic diversity of 79 T. daenensis accessions from 16 regions in Iran, located at extremes and the central regions of the Zagros range. Fourteen SRAP primer combinations (PCs) amplified 240 stable and reproducible fragments, of which 198 (82.5%) were polymorphic for all accessions. The PIC value for PCs ranged from 0.195 to 0.333 with an average of 0.284. Neighbor-joining tree constructed from Dice’s similarity matrix of SRAP data revealed two major groups and verified with the results of AMOVA (P < 0.001; genetic distance = 0.98). The Tc and Te groups included the accessions collected from the center and the extremes of the Zagros Mountains, respectively. The results showed that the current scattered distribution area of Iranian thyme is probably recent due mainly to anthropic pressures and limited gene flow via seed and/or pollen dispersal.


HortScience ◽  
2004 ◽  
Vol 39 (5) ◽  
pp. 955-958 ◽  
Author(s):  
H. Budak ◽  
R.C. Shearman ◽  
R.E. Gaussoin ◽  
I. Dweikat

A simple marker technique called sequence-related amplified polymorphism (SRAP) provides a useful tool for estimation of genetic diversity and phenetic relationships in natural and domesticated populations. Previous studies and our initial screen showed SRAP is highly polymorphic and more informative when compared to AFLP, RAPD and SSR markers. In this study, applicability of the SRAP markers to obtain an overview of genetic diversity and phenetic relationships present among cool-season (C3) and warm-season (C4) turfgrass species and their relationship with other Gramineae species were tested. Phenetic trees based on genetic similarities (UPGMA, N-J) were consistent with known taxonomic relationships. In some cases, well-supported relationships as well as evidence by genetic reticulation could be inferred. There was widespread genetic variation among C3 and C4 turfgrass species. In Dice based cophenetic matrix, genetic similarities among all species studied ranged from 0.08 to 0.94, whereas in Jaccard based cophenetic matrix, genetic similarities ranged from 0.05 to 0.85. C3 and C4 species were clearly distinguishable and a close relationship between italian ryegrass and tall fescue were obtained based on SRAP. Genome structures of turfgrasses are comparable to other Gramineae species. This research indicates that the SRAP markers are useful for estimating genetic relationships in a wide range of turfgrass species. The SRAP markers identified in this study can provide a useful reference for future turfgrass breeding efforts.


2016 ◽  
Vol 18 (10) ◽  
pp. 945-954
Author(s):  
Ping Du ◽  
Tian-Xu Cao ◽  
Bao-Kai Cui ◽  
Yuan Yuan ◽  
Yu-Cheng Dai

2010 ◽  
Vol 18 (2) ◽  
pp. 150
Author(s):  
Fu Hongtuo ◽  
Qiao Hui ◽  
Yao Jianhua ◽  
Gong Yongsheng ◽  
Wu Yan ◽  
...  

2013 ◽  
Vol 36 (5) ◽  
pp. 858-864
Author(s):  
Chang-Hong CHENG ◽  
Min-Ying ZHANG ◽  
Kai LIU ◽  
Dong-Po XU ◽  
Jin-Rong DUAN ◽  
...  

2010 ◽  
Vol 38 (1) ◽  
pp. 63-72 ◽  
Author(s):  
You-Gen Wu ◽  
Qiao-Sheng Guo ◽  
Ji-Chan He ◽  
You-Fen Lin ◽  
Li-Juan Luo ◽  
...  

2003 ◽  
Vol 54 (5) ◽  
pp. 429 ◽  
Author(s):  
J. S. Croser ◽  
F. Ahmad ◽  
H. J. Clarke ◽  
K. H. M. Siddique

Efforts to improve the yield and quality of cultivated chickpea (Cicer arietinum L.) are constrained by a low level of intraspecific genetic diversity. Increased genetic diversity can be achieved via the hybridisation of the cultivated species with the unimproved 'wild' relatives from within the 43 species of the Cicer genus. To date, the 8 species sharing an annual growth habit and chromosome number with C. arietinum have been the primary focus of screening and introgression efforts. Screening of these species has uncovered morphological characteristics and resistance to a number of abiotic and biotic stresses that are of potential value to chickpea improvement programs. Detailed analysis of protein and DNA, karyotyping, and crossability studies have begun to elucidate the relationships between the annual Cicer species. In comparison, perennial species have received little attention due to difficulties in collection, propagation, and evaluation. This review discusses the progress towards an understanding of genetic relationships between the Cicer species, and the introgression of genes from the wild Cicer species into the cultivated species.


Weed Science ◽  
2007 ◽  
Vol 55 (2) ◽  
pp. 95-101 ◽  
Author(s):  
Runzhi Li ◽  
Shiwen Wang ◽  
Liusheng Duan ◽  
Zhaohu Li ◽  
Michael J. Christoffers ◽  
...  

Weed genetic diversity is important for understanding the ability of weeds to adapt to different environments and the impact of herbicide selection on weed populations. Genetic diversity within and among six wild oat populations in China varying in herbicide selection pressure and one population in North Dakota were surveyed using 64 polymorphic alleles resulting from 25 microsatellite loci. Mean Nei's gene diversity (h) for six wild oat populations from China was between 0.17 and 0.21, and total diversity (HT) was 0.23. A greater proportion of this diversity, however, was within (Hs= 0.19) rather than among (Gst= 0.15) populations. For the wild oat population from the United States,h= 0.24 andHT= 0.24 were comparable to the values for the six populations from China. Cluster analysis divided the seven populations into two groups, where one group was the United States population and the other group included the six Chinese populations. The genetic relationships among six populations from China were weakly correlated with their geographic distribution (r= 0.22) using the Mantel test. Minimal difference in gene diversity and small genetic distance (Nei's distance 0.07 or less) among six populations from China are consistent with wide dispersal of wild oat in the 1980s. Our results indicate that the wild oat populations in China are genetically diverse at a level similar to North America, and the genetic diversity of wild oat in the broad spatial scale is not substantially changed by environment, agronomic practices, or herbicide usage.


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