In this chapter, we show how the partial structures framework can be used to give an account of how scientific models represent systems, and in a way that pays due regard to the relations between the relevant mathematics and such models. In particular, both the open-ended nature of these developments and the transfer of relations between one structure and another can be accommodated within the partial structures account. Finally, the expansion of the framework to include partial homomorphisms holding between structures also allows us to accommodate the fact that typically not all of the mathematics is used in a particular application, leaving surplus structure that can be subsequently exploited.