Detection of a distinct variation site for geographical classification of mitochondrial DNA haplogroup A in the domestic goat (Capra hircus)

2014 ◽  
Vol 36 (6) ◽  
pp. 701-709
Author(s):  
Jae-Hwan Kim ◽  
Mi-Jeong Byun ◽  
Seong-Bok Choi ◽  
Sangwon Suh ◽  
Young-Sin Kim ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Capra Hircus ◽  
Domestic Goat

scholarly journals Large-Scale Mitochondrial DNA Analysis of the Domestic Goat Reveals Six Haplogroups with High Diversity

PLoS ONE ◽  
2007 ◽  
Vol 2 (10) ◽  
pp. e1012 ◽  
Author(s):  
Saeid Naderi ◽  
Hamid-Reza Rezaei ◽  
Pierre Taberlet ◽  
Stéphanie Zundel ◽  
Seyed-Abbas Rafat ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Large Scale ◽  
Dna Analysis ◽  
Domestic Goat ◽  
Mitochondrial Dna Analysis ◽  
High Diversity

Development and characterization of 260 microsatellite loci in the domestic goat, Capra hircus

2011 ◽  
Vol 43 (3) ◽  
pp. 365-366 ◽  
Author(s):  
Y. Seki ◽  
M. Yokohama ◽  
D. Ishikawa ◽  
N. Ikehara ◽  
K. Wada ◽  
...  
Keyword(s):  
Microsatellite Loci ◽  
Capra Hircus ◽  
Domestic Goat

HaploGrep: a fast and reliable algorithm for automatic classification of mitochondrial DNA haplogroups

2010 ◽  
Vol 32 (1) ◽  
pp. 25-32 ◽  
Author(s):  
Anita Kloss-Brandstätter ◽  
Dominic Pacher ◽  
Sebastian Schönherr ◽  
Hansi Weissensteiner ◽  
Robert Binna ◽  
...  
Keyword(s):  
Mitochondrial Dna ◽  
Automatic Classification

PHARMACOKINETICS AND CLINICAL EFFECTS OF A SINGLE ORAL DOSE OF TRAZODONE IN THE DOMESTIC GOAT (CAPRA HIRCUS) AS A MODEL FOR WILD RUMINANTS

2021 ◽  
Vol 51 (4) ◽  
Author(s):  
Yasmeen Prud'homme ◽  
Shannon T. Ferrell ◽  
Francis Beaudry ◽  
Guy Beauchamp ◽  
Sylvain Nichols ◽  
...  
Keyword(s):  
Oral Dose ◽  
Single Oral Dose ◽  
Capra Hircus ◽  
Clinical Effects ◽  
Domestic Goat ◽  
Wild Ruminants

scholarly journals A Mini-Atlas of Gene Expression for the Domestic Goat (Capra hircus)

2019 ◽  
Vol 10 ◽  
Author(s):  
Charity Muriuki ◽  
Stephen J. Bush ◽  
Mazdak Salavati ◽  
Mary E.B. McCulloch ◽  
Zofia M. Lisowski ◽  
...  
Keyword(s):  
Gene Expression ◽  
Capra Hircus ◽  
Domestic Goat

scholarly journals SPInDel Analysis of the Non-Coding Regions of cpDNA as a More Useful Tool for the Identification of Rye (Poaceae: Secale) Species

2020 ◽  
Vol 21 (24) ◽  
pp. 9421
Author(s):  
Lidia Skuza ◽  
Ewa Filip ◽  
Izabela Szućko ◽  
Jan Bocianowski
Keyword(s):  
Mitochondrial Dna ◽  
Molecular Markers ◽  
Related Species ◽  
Economic Importance ◽  
Closely Related Species ◽  
Coding Sequences ◽  
Coding Regions ◽  
Genomic Regions ◽  
Tribe Triticeae

Secale is a small but very diverse genus from the tribe Triticeae (family Poaceae), which includes annual, perennial, self-pollinating and open-pollinating, cultivated, weedy and wild species of various phenotypes. Despite its high economic importance, classification of this genus, comprising 3–8 species, is inconsistent. This has resulted in significantly reduced progress in the breeding of rye which could be enriched with functional traits derived from wild rye species. Our previous research has suggested the utility of non-coding sequences of chloroplast and mitochondrial DNA in studies on closely related species of the genus Secale. Here we applied the SPInDel (Species Identification by Insertions/Deletions) approach, which targets hypervariable genomic regions containing multiple insertions/deletions (indels) and exhibiting extensive length variability. We analysed a total of 140 and 210 non-coding sequences from cpDNA and mtDNA, respectively. The resulting data highlight regions which may represent useful molecular markers with respect to closely related species of the genus Secale, however, we found the chloroplast genome to be more informative. These molecular markers include non-coding regions of chloroplast DNA: atpB-rbcL and trnT-trnL and non-coding regions of mitochondrial DNA: nad1B-nad1C and rrn5/rrn18. Our results demonstrate the utility of the SPInDel concept for the characterisation of Secale species.

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