Genome-wide analysis of the auxin response factors (ARF) gene family in barley (Hordeum vulgare L.)

2018 ◽  
Vol 28 (1) ◽  
pp. 14-24 ◽  
Author(s):  
Huseyin Tombuloglu
Keyword(s):  
Hordeum Vulgare ◽  
Gene Family ◽  
Auxin Response ◽  
Hordeum Vulgare L ◽  
Response Factors ◽  
Auxin Response Factors ◽  
Genome Wide Analysis ◽  
Genome Wide

Genome-wide analysis of the auxin response factors (ARF) gene family in rice (Oryza sativa)

Gene ◽  
2007 ◽  
Vol 394 (1-2) ◽  
pp. 13-24 ◽  
Author(s):  
Dekai Wang ◽  
Kemei Pei ◽  
Yaping Fu ◽  
Zongxiu Sun ◽  
Sujuan Li ◽  
...  
Keyword(s):  
Oryza Sativa ◽  
Gene Family ◽  
Auxin Response ◽  
Response Factors ◽  
Auxin Response Factors ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide Analysis of APETALA2/Ethylene-Responsive Factor (AP2/ERF) Gene Family in Barley (Hordeum vulgare L.)

PLoS ONE ◽  
2016 ◽  
Vol 11 (9) ◽  
pp. e0161322 ◽  
Author(s):  
Baojian Guo ◽  
Yafeng Wei ◽  
Ruibin Xu ◽  
Shen Lin ◽  
Haiye Luan ◽  
...  
Keyword(s):  
Hordeum Vulgare ◽  
Gene Family ◽  
Hordeum Vulgare L ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
Ethylene Responsive Factor

scholarly journals A genome-wide analysis of the ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES (AS2/LOB) gene family in barley (Hordeum vulgare L.)

2016 ◽  
Vol 17 (10) ◽  
pp. 763-774 ◽  
Author(s):  
Bao-jian Guo ◽  
Jun Wang ◽  
Shen Lin ◽  
Zheng Tian ◽  
Kai Zhou ◽  
...  
Keyword(s):  
Hordeum Vulgare ◽  
Gene Family ◽  
Hordeum Vulgare L ◽  
Genome Wide Analysis ◽  
Genome Wide ◽  
A Genome ◽  
Lateral Organ ◽  
Organ Boundaries

Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays)

2010 ◽  
Vol 63 (3) ◽  
pp. 225-234 ◽  
Author(s):  
Yan Liu ◽  
HaiYang Jiang ◽  
Wenjuan Chen ◽  
Yexiong Qian ◽  
Qing Ma ◽  
...  
Keyword(s):  
Zea Mays ◽  
Gene Family ◽  
Auxin Response Factor ◽  
Response Factor ◽  
Auxin Response ◽  
Genome Wide Analysis ◽  
Genome Wide

scholarly journals Genome-Wide cis-Regulatory Element Based Discovery of Auxin-Responsive Genes in Higher Plant

Genes ◽  
2021 ◽  
Vol 13 (1) ◽  
pp. 24
Author(s):  
Jianfei Wu ◽  
Fan Gao ◽  
Tongtong Li ◽  
Haixia Guo ◽  
Li Zhang ◽  
...  
Keyword(s):  
Target Genes ◽  
Regulatory Element ◽  
Regulatory Elements ◽  
Auxin Response ◽  
Higher Plant ◽  
Response Factors ◽  
Auxin Response Factors ◽  
Genome Wide ◽  
A Genome ◽  
Almost All

Auxin has a profound impact on plant physiology and participates in almost all aspects of plant development processes. Auxin exerts profound pleiotropic effects on plant growth and differentiation by regulating the auxin response genes’ expressions. The classical auxin reaction is usually mediated by auxin response factors (ARFs), which bind to the auxin response element (AuxRE) in the promoter region of the target gene. Experiments have generated only a limited number of plant genes with well-characterized functions. It is still unknown how many genes respond to exogenous auxin treatment. An economical and effective method was proposed for the genome-wide discovery of genes responsive to auxin in a model plant, Arabidopsis thaliana (A. thaliana). Our method relies on cis-regulatory-element-based targeted gene finding across different promoters in a genome. We first exploit and analyze auxin-specific cis-regulatory elements for the transcription of the target genes, and then identify putative auxin responsive genes whose promoters contain the elements in the collection of over 25,800 promoters in the A. thaliana genome. Evaluating our result by comparing with a published database and the literature, we found that this method has an accuracy rate of 65.2% (309/474) for predicting candidate genes responsive to auxin. Chromosome distribution and annotation of the putative auxin-responsive genes predicted here were also mined. The results can markedly decrease the number of identified but merely potential auxin target genes and also provide useful clues for improving the annotation of gene that lack functional information.

scholarly journals Genome-wide characterization and expression analyses of the auxin/indole-3-acetic acid (Aux/IAA) gene family in barley (Hordeum vulgare L.)

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Qi Shi ◽  
Yueya Zhang ◽  
Vinh-Trieu To ◽  
Jin Shi ◽  
Dabing Zhang ◽  
...  
Keyword(s):  
Acetic Acid ◽  
Hordeum Vulgare ◽  
Gene Family ◽  
Hordeum Vulgare L ◽  
Genome Wide ◽  
Indole 3 Acetic Acid
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