Characterization of the reaction sequence involved in phospholipid labeling and deacylation and prostaglandin synthesis and actions

1978 ◽  
Vol 62 (2) ◽  
pp. 96-102 ◽  
Author(s):  
P NEEDLEMAN
2021 ◽  
Author(s):  
Rosa V. Espinoza ◽  
Kersti Caddell Haatveit ◽  
S. Wald Grossman ◽  
Jin Yi Tan ◽  
Caylie A. McGlade ◽  
...  

<div> <div> <div> <p>Iterative P450 enzymes are powerful biocatalysts for selective late-stage C-H oxidation of complex natural product scaffolds. These enzymes represent new tools for selectivity and cascade reactions, facilitating direct access to core structure diversification. Recently, we reported the structure of the multifunctional bacterial P450 TamI and elucidated the molecular basis of its substrate binding and strict reaction sequence at distinct carbon atoms of the substrate. Here, we report the design and characterization of a toolbox of TamI biocatalysts, generated by mutations at Leu101, Leu244 and/or Leu295, that alter the native selectivity, step sequence and number of reactions catalyzed, including the engineering of a variant capable of catalyzing a four-step oxidative cascade without the assistance of the flavoprotein and oxidative partner TamL. The tuned enzymes override inherent substrate reactivity enabling catalyst- controlled C-H functionalization and alkene epoxidation of the tetramic acid-containing natural product tirandamycin. Five new, bioactive tirandamycin derivatives (6-10) were generated through TamI-mediated enzymatic synthesis. Quantum mechanics calculations and MD simulations provide important insights on the basis of altered selectivity and underlying biocatalytic mechanisms for enhanced continuous oxidation of the iterative P450 TamI. </p> </div> </div> </div>


2005 ◽  
Vol 187 (15) ◽  
pp. 5189-5194 ◽  
Author(s):  
Jason A. Hall ◽  
Ana M. Pajor

ABSTRACT We have cloned and functionally characterized a Na+-coupled dicarboxylate transporter, SdcS, from Staphylococcus aureus. This carrier protein is a member of the divalent anion/Na+ symporter (DASS) family and shares significant sequence homology with the mammalian Na+/dicarboxylate cotransporters NaDC-1 and NaDC-3. Analysis of SdcS function indicates transport properties consistent with those of its eukaryotic counterparts. Thus, SdcS facilitates the transport of the dicarboxylates fumarate, malate, and succinate across the cytoplasmic membrane in a Na+-dependent manner. Furthermore, kinetic work predicts an ordered reaction sequence with Na+ (K 0.5 of 2.7 mM) binding before dicarboxylate (Km of 4.5 μM). Because this transporter and its mammalian homologs are functionally similar, we suggest that SdcS may serve as a useful model for DASS family structural analysis.


2006 ◽  
Vol 59 (5) ◽  
pp. 302 ◽  
Author(s):  
Joseph G. Altin ◽  
Martin G. Banwell ◽  
Phillip A. Coghlan ◽  
Christopher J. Easton ◽  
Michael R. Nairn ◽  
...  

A six-step reaction sequence is described for the preparation of compound 1 (NTA3-DTDA), a membrane-penetrating and potent chelator that can be incorporated into liposomes and plasma membrane vesicles containing antigens and thus allowing targeted delivery of such assemblies to a variety of cells for the purposes of eliciting anti-tumour responses. Full spectroscopic characterization of this dendritic-type compound as well as certain of its precursors is reported.


2010 ◽  
Vol 431 (3) ◽  
pp. 337-347 ◽  
Author(s):  
Dana Morrone ◽  
Xiaoming Chen ◽  
Robert M. Coates ◽  
Reuben J. Peters

KO (kaurene oxidase) is a multifunctional cytochrome P450 catalysing three sequential oxidations in gibberellin phytohormone biosynthesis. These serve to transform the C4α methyl of the ent-kaurene olefin intermediate into the carboxylic acid moiety of ent-kauren-19-oic acid. To investigate the unknown catalytic mechanism and properties of KO, we have engineered the corresponding CYP701A3 from Arabidopsis thaliana (AtKO) for functional recombinant expression in Escherichia coli, involving use of a fully codon-optimized construct, along with additional N-terminal deletion and modification. This recombinant AtKO (rAtKO) was used to carry out 18O2 labelling studies with ent-kaurene, and the intermediates ent-kaurenol and ent-kaurenal, to investigate the multifunctional reaction sequence; revealing catalysis of three hydroxylation reactions, which further requires dehydration at some stage. Accordingly, following initial hydroxylation, ent-kaurenol must then be further hydroxylated to a gem-diol intermediate, and our data indicate that the subsequent reactions proceed via dehydration of the gem-diol to ent-kaurenal, followed by an additional hydroxylation to directly form ent-kaurenoic acid. Kinetic analysis indicates that these intermediates are all retained in the active site during the course of the reaction series, with the first hydroxylation being rate-limiting. In addition, investigation of alternative substrates demonstrated that ent-beyerene, which differs in ring structure distal to the C4α methyl, is only hydroxylated by rAtKO, indicating the importance of the exact tetracyclic ring structure of kaurane for multifunctional KO activity. Thus the results of the present study clarify the reaction sequence and enzymatic mechanism of KO, as well as substrate features critical for the catalysed multiple reaction sequence.


1979 ◽  
Author(s):  
C.J.W. van Ginkel ◽  
J.A. van Mourik ◽  
J.I.H. Oh ◽  
J. Vreeken ◽  
W.U. van Aken

During short-terra culture monocytes (M) only, not granulocytes or lymphocytes, generate thromboplastin (TP) activity which is absent Immediately after isolation. To clarify the mechanism whereby M generate TP, J approaches were applied: I. To investigate the presence of hidden” TP, freshly Isolated M were subjected either to mechanical disruption, to enzymatic stripping or to dellpldation, followed by reconstitution of the lipoproteins with exogenous phospholipids. No TP activity could be detected after any of these treatments. II. Using an antiserum against human brain TP apoprotein which cross-reacted with monocyte TP, it was shown that intact and disrupted freshly Isolated M lack TP related antigen whereas cultured M display binding of anti-TP antibodies. However, M cultured in the presence of protein synthesis Inhibitors and cultured lymphocytes, lacked TP antigen. III. Using several agents known to affect cellular processes, TP generation was shown to be dependent on;protein and RNA synthesis, energy metabolism, cAMP metabolism, assemblage of microtubules and divalent cations. Inhibition of prostaglandin synthesis by indomethacln did not arrect TP generation. M from 3 patients with COD displayed normal TP generation. These two observations suggest that prostaglandin synthesis and oxygen radicals are not involved Is TP generation. In conelusion, our data indicates that de novo synthesis of TP apoprotein Is responsible for the in vitro generation of TP activity by monocytes.


2021 ◽  
Author(s):  
Rosa V. Espinoza ◽  
Kersti Caddell Haatveit ◽  
S. Wald Grossman ◽  
Jin Yi Tan ◽  
Caylie A. McGlade ◽  
...  

<div> <div> <div> <p>Iterative P450 enzymes are powerful biocatalysts for selective late-stage C-H oxidation of complex natural product scaffolds. These enzymes represent new tools for selectivity and cascade reactions, facilitating direct access to core structure diversification. Recently, we reported the structure of the multifunctional bacterial P450 TamI and elucidated the molecular basis of its substrate binding and strict reaction sequence at distinct carbon atoms of the substrate. Here, we report the design and characterization of a toolbox of TamI biocatalysts, generated by mutations at Leu101, Leu244 and/or Leu295, that alter the native selectivity, step sequence and number of reactions catalyzed, including the engineering of a variant capable of catalyzing a four-step oxidative cascade without the assistance of the flavoprotein and oxidative partner TamL. The tuned enzymes override inherent substrate reactivity enabling catalyst- controlled C-H functionalization and alkene epoxidation of the tetramic acid-containing natural product tirandamycin. Five new, bioactive tirandamycin derivatives (6-10) were generated through TamI-mediated enzymatic synthesis. Quantum mechanics calculations and MD simulations provide important insights on the basis of altered selectivity and underlying biocatalytic mechanisms for enhanced continuous oxidation of the iterative P450 TamI. </p> </div> </div> </div>


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