Formation of mesopyrophaeophorbide a during anaerobic bacterial degradation of the marine prymnesiophyte Emiliania huxleyi

1995 ◽  
Vol 22 (1) ◽  
pp. 225-229 ◽  
Author(s):  
N. Spooner ◽  
J.M. Getliff ◽  
M.A. Teece ◽  
R.J. Parkes ◽  
J.W. Leftley ◽  
...  
1992 ◽  
Vol 6 ◽  
pp. 36-36
Author(s):  
Derek E.G. Briggs ◽  
John M. Getliff ◽  
John W. Leftley ◽  
James R. Maxwell ◽  
R. John. Parkes ◽  
...  

The distribution of molecular markers in sediments provides a reservoir of unique information concerning biogeochemical processes in the geological past, and how these processes respond to environmental change. However, sedimentary systems themselves are biologically dynamic and these markers, and their precursors, have been subjected to bacterial degradation and modification. Recent research indicates that key changes in sedimented organic matter take place during the earliest stages of sediment burial and diagenesis where bacterial activity is also intense. Hence, effective interpretation of the distribution of biomarkers from deep sediment layers and sedimentary rocks requires knowledge of the rates and processes of bacterial decomposition under a range of environmental conditions.Algae are important primary producers in the marine environment. The prymnesiophyte alga Emiliania huxleyi was selected as a subject for study as it is a source of long chain ketones which are geochemically important biomarkers. The ratio of the ketones C37:2 to C37:3 is temperature sensitive and has been used as a palaeotemperature indicator (UK37).Preliminary sediment slurry incubations were carried out to optimize experimental design (concentration of decay organism, concentration of sediment in slurry, ability to obtain defined microbial environments over long term incubations, aerobic and anaerobic), and quantitative analytical scheme (extraction and separation technique, type and concentration of internal standards). Subsequent experiments on aerobic bacterial degradation of E. huxleyi demonstrated rapid increase in bacterial activity and biomass. This was accompanied by major changes in lipid classes. The dominant aliphatic hydrocarbons, three isomers of nC31:2, were rapidly degraded and completely removed by 78 days. In contrast, in preliminary anaerobic incubations, the same compounds remained unchanged. By 78 days a significant reduction in the total algal sterols was accompanied by a small increase in total stanols; hence the cholestanol/cholesterol ratio increased markedly. The abundance of the long chain unsaturated ketone C37:3 decreased relative to C37:2 resulting in an increase in the UK37 ratio. The reasons for these changes are unclear. However, they indicate that bacterial degradation may have to be taken into account in the interpretation of UK37 ratios in terms of paleotemperatures.Further experiments are in progress to clarify the interpretation of these results and provide information on the more recalcitrant biomarkers.


2009 ◽  
Vol 6 (5) ◽  
pp. 9817-9848
Author(s):  
A. Biermann ◽  
A. Engel

Abstract. Coccolithophores play an important role in organic matter export due to their production of the mineral calcite that can act as ballast. Recent studies indicated that calcification in coccolithophores may be affected by changes in seawater carbonate chemistry. We investigated the influence of CO2 on the aggregation and sinking behaviour of the coccolithophore Emiliania huxleyi (PML B92/11) during a laboratory experiment. The coccolithophores were grown under low (~180 μatm), medium (~380 μatm), and high (~750 μatm) CO2 conditions. Aggregation of the cells was promoted using roller tables. Size and settling velocity of aggregates were determined during the incubation using video image analysis. The results show that CO2 induced changes in the inorganic carbon to organic carbon ratio (PIC/POC) influence the porosity and hence the sinking velocity of aggregates of Emiliania huxleyi. Average sinking velocity was highest for low CO2 aggregates (~1292 m d−1) that also had the highest PIC/POC ratio. Lowest PIC/POC ratios and lowest sinking velocity (~366 m d−1) at comparable sizes were observed for aggregates of the high CO2 treatment. Aggregates of the high CO2 treatment showed an excess density about one order of magnitude lower (~4.2×10−4 g cm−3) when compared to aggregates from the medium and low CO2 treatments (~1.7×10−3 g cm−3). Thus, the amount of calcite in aggregates is crucial for the degree of ballasting effect. In the high CO2 treatment, aggregates with lower calcite content had higher bacterial abundance, suggesting enhanced bacterial degradation. Thus, our findings indicate that a CO2 induced reduction of calcite content aggregates could affect the vertical export of organic matter in the ocean, particularly in areas dominated by coccolithophores blooms.


2015 ◽  
Vol 74 (2) ◽  
pp. 173-185 ◽  
Author(s):  
LJ Darroch ◽  
M Lavoie ◽  
M Levasseur ◽  
I Laurion ◽  
WG Sunda ◽  
...  

2021 ◽  
Vol 14 ◽  
pp. 117863612110242
Author(s):  
Sonal Suman ◽  
Tanuja

DDT is one of the most persistent pesticides among all the different types of organo-chlorine pesticides used. Among all the degradation methods, bacterial degradation of DDT is most effective. The present study was conducted to isolate different bacteria present in waste samples which have the ability to degrade DDT present in the soil in the minimum possible period of time and to observe the effect of different physical and chemical properties of the soil samples. Many pesticide degrading bacteria were isolated and identified through cultural, biochemical tests and further identified by 16S RNA sequencing method. The most potent strain DDT 1 growth in mineral salt medium supplemented with DDT as the only source of carbon (5-100 PPM) and was monitored at an optical density of 600 nm. The growth parameters at different physio-chemical conditions were further optimized. The result showed that Enterobacter cloacae had maximum growth in 15 days. FTIR analysis of the residual DDT after 15 days incubation showed that Enterobacter cloacae was able to degrade pesticide into its further metabolites of DDD, DDE, DDNU and other components can be used for biodegradation of DDT present in contaminated soil and water ecosystems.


1973 ◽  
Vol 248 (22) ◽  
pp. 7798-7805
Author(s):  
Wha Bin Im ◽  
Donald B. McCormick ◽  
Lemuel D. Wright

1970 ◽  
Vol 245 (23) ◽  
pp. 6264-6268 ◽  
Author(s):  
Jerome A. Roth ◽  
Donald B. McCormick ◽  
Lemuel D. Wright

2021 ◽  
Vol 21 (1) ◽  
Author(s):  
Victoria Yu Shtratnikova ◽  
Mikhail I. Sсhelkunov ◽  
Victoria V. Fokina ◽  
Eugeny Y. Bragin ◽  
Andrey A. Shutov ◽  
...  

Abstract Background Bacterial degradation/transformation of steroids is widely investigated to create biotechnologically relevant strains for industrial application. The strain of Nocardioides simplex VKM Ac-2033D is well known mainly for its superior 3-ketosteroid Δ1-dehydrogenase activity towards various 3-oxosteroids and other important reactions of sterol degradation. However, its biocatalytic capacities and the molecular fundamentals of its activity towards natural sterols and synthetic steroids were not fully understood. In this study, a comparative investigation of the genome-wide transcriptome profiling of the N. simplex VKM Ac-2033D grown on phytosterol, or in the presence of cortisone 21-acetate was performed with RNA-seq. Results Although the gene patterns induced by phytosterol generally resemble the gene sets involved in phytosterol degradation pathways in mycolic acid rich actinobacteria such as Mycolicibacterium, Mycobacterium and Rhodococcus species, the differences in gene organization and previously unreported genes with high expression level were revealed. Transcription of the genes related to KstR- and KstR2-regulons was mainly enhanced in response to phytosterol, and the role in steroid catabolism is predicted for some dozens of the genes in N. simplex. New transcription factors binding motifs and new candidate transcription regulators of steroid catabolism were predicted in N. simplex. Unlike phytosterol, cortisone 21-acetate does not provide induction of the genes with predicted KstR and KstR2 sites. Superior 3-ketosteroid-Δ1-dehydrogenase activity of N. simplex VKM Ac-2033D is due to the kstDs redundancy in the genome, with the highest expression level of the gene KR76_27125 orthologous to kstD2, in response to cortisone 21-acetate. The substrate spectrum of N. simplex 3-ketosteroid-Δ1-dehydrogenase was expanded in this study with progesterone and its 17α-hydroxylated and 11α,17α-dihydroxylated derivatives, that effectively were 1(2)-dehydrogenated in vivo by the whole cells of the N. simplex VKM Ac-2033D. Conclusion The results contribute to the knowledge of biocatalytic features and diversity of steroid modification capabilities of actinobacteria, defining targets for further bioengineering manipulations with the purpose of expansion of their biotechnological applications.


2016 ◽  
Vol 210 (1) ◽  
pp. 88-96 ◽  
Author(s):  
Sergey Malitsky ◽  
Carmit Ziv ◽  
Shilo Rosenwasser ◽  
Shuning Zheng ◽  
Daniella Schatz ◽  
...  

2009 ◽  
Vol 113 (3-4) ◽  
pp. 219-226 ◽  
Author(s):  
Christian Lønborg ◽  
Keith Davidson ◽  
Xosé A. Álvarez–Salgado ◽  
Axel E.J. Miller

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