Actin genes from the sea star Pisaster ochraceus

Author(s):  
Imre Kovesdi ◽  
Frank Preugschat ◽  
Margaret Stuerzl ◽  
Michael J. Smith
1985 ◽  
Vol 63 (11) ◽  
pp. 1145-1151 ◽  
Author(s):  
Imre Kovesdi ◽  
Michael J. Smith

The number of actin genes per haploid genome of three sea star species has been measured by reassociation of a single-strand actin-coding sequence probe with excess genomic DNA. Least-squares fit analyses of the reassociation curve indicate five actin genes for Pisaster ochraceus and Pisaster brevispinus and eight actin genes for Dermasterias imbricata. Using 3′ untranslated sequence probes from cDNAs or 3′ noncoding regions of a genomic clone, essentially all of the actin-containing Southern digest fragments can be assigned to the three actin gene classes described earlier for P. ochraceus. Through analyses of genomic digests and dot blots from P. ochraceus probed with both the actin sequence and 3′ sequence, the copy number of gene class members per genome has also been estimated.


2020 ◽  
Vol 637 ◽  
pp. 59-69 ◽  
Author(s):  
J Sullivan-Stack ◽  
BA Menge

Top predator decline has been ubiquitous across systems over the past decades and centuries, and predicting changes in resultant community dynamics is a major challenge for ecologists and managers. Ecological release predicts that loss of a limiting factor, such as a dominant competitor or predator, can release a species from control, thus allowing increases in its size, density, and/or distribution. The 2014 sea star wasting syndrome (SSWS) outbreak decimated populations of the keystone predator Pisaster ochraceus along the Oregon coast, USA. This event provided an opportunity to test the predictions of ecological release across a broad spatial scale and determine the role of competitive dynamics in top predator recovery. We hypothesized that after P. ochraceus loss, populations of the subordinate sea star Leptasterias sp. would grow larger, more abundant, and move downshore. We based these predictions on prior research in Washington State showing that Leptasterias sp. competed with P. ochraceus for food. Further, we predicted that ecological release of Leptasterias sp. could provide a bottleneck to P. ochraceus recovery. Using field surveys, we found no clear change in density or distribution in Leptasterias sp. populations post-SSWS, and decreases in body size. In a field experiment, we found no evidence of competition between similar-sized Leptasterias sp. and P. ochraceus. Thus, the mechanisms underlying our predictions were not in effect along the Oregon coast, which we attribute to differences in habitat overlap and food availability between the 2 regions. Our results suggest that response to the loss of a dominant competitor can be unpredictable even when based in theory and previous research.


Viruses ◽  
2020 ◽  
Vol 12 (11) ◽  
pp. 1332
Author(s):  
Ian Hewson ◽  
Citlalli A. Aquino ◽  
Christopher M. DeRito

Sea star wasting disease (SSWD) is a condition that has affected asteroids for over 120 years, yet mechanistic understanding of this wasting etiology remains elusive. We investigated temporal virome variation in two Pisaster ochraceus specimens that wasted in the absence of external stimuli and two specimens that did not experience SSWD for the duration of our study, and compared viromes of wasting lesion margin tissues to both artificial scar margins and grossly normal tissues over time. Global assembly of all SSWD-affected tissue libraries resulted in 24 viral genome fragments represented in >1 library. Genome fragments mostly matched densoviruses and picornaviruses with fewer matching nodaviruses, and a sobemovirus. Picornavirus-like and densovirus-like genome fragments were most similar to viral genomes recovered in metagenomic study of other marine invertebrates. Read recruitment revealed only two picornavirus-like genome fragments that recruited from only SSWD-affected specimens, but neither was unique to wasting lesions. Wasting lesion margin reads recruited to a greater number of viral genotypes (i.e., richness) than did either scar tissue and grossly normal tissue reads. Taken together, these data suggest that no single viral genome fragment was associated with SSWD. Rather, wasting lesion margins may generally support viral proliferation.


2007 ◽  
Vol 61 (2) ◽  
pp. 201-210 ◽  
Author(s):  
Peter T. Raimondi ◽  
Raphael D. Sagarin ◽  
Richard F. Ambrose ◽  
Christy Bell ◽  
Maya George ◽  
...  

1985 ◽  
Vol 5 (11) ◽  
pp. 3001-3008 ◽  
Author(s):  
I Kovesdi ◽  
M J Smith

Actin coding sequence cDNA probes were used to quantitate the number of transcripts in RNA from eggs, embryos, and tube feet of the sea star Pisaster ochraceus. Transcript concentrations were measured in both total RNA and in poly(A)+ RNA by titration and hybridization kinetic methods. Surprisingly, the actin transcript number in sea star eggs is two orders of magnitude greater than in sea urchin eggs. There are at least 2.9 X 10(5) actin transcripts per sea star egg, 1.2 X 10(5) per 48-h gastrula and 1.9 X 10(5) per 72-h gastrula. The number of actin transcripts per unit mass of extracted tube foot RNA is lower than in developmental stages. The relative abundance and size of actin transcripts was determined by Northern and dot blot analyses using probes containing actin coding DNA or 3'-untranslated-region sequences. The actin transcript in eggs and embryos is 2,300 nucleotides (nt) long and originates from the Cy (cytoplasmic) gene class. In tube feet, the most abundant actin transcript is 2,200 nt long and originates from the M (muscle) gene class. Tube feet also contain, at lower abundance, 2,300-nt transcripts of the Cy gene type expressed in eggs and embryos.


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