scholarly journals P-46 Advanced colorectal adenoma detection based on altered methylation signal in plasma samples

2020 ◽  
Vol 31 ◽  
pp. S104
Author(s):  
K. Kruusmaa ◽  
M. Bitenc ◽  
M. Chersicola ◽  
P. Knap ◽  
W. Pulverer ◽  
...  
2020 ◽  
Vol 91 (6) ◽  
pp. AB487
Author(s):  
Yoshihiro Shimoyama ◽  
Ken Takeuchi ◽  
Hiroshi Sashiyama ◽  
Yukihiro Hamahata ◽  
Tatsunori Minamide ◽  
...  

BMJ Open ◽  
2020 ◽  
Vol 10 (9) ◽  
pp. e036423
Author(s):  
Zhigang Song ◽  
Chunkai Yu ◽  
Shuangmei Zou ◽  
Wenmiao Wang ◽  
Yong Huang ◽  
...  

ObjectivesThe microscopic evaluation of slides has been gradually moving towards all digital in recent years, leading to the possibility for computer-aided diagnosis. It is worthwhile to know the similarities between deep learning models and pathologists before we put them into practical scenarios. The simple criteria of colorectal adenoma diagnosis make it to be a perfect testbed for this study.DesignThe deep learning model was trained by 177 accurately labelled training slides (156 with adenoma). The detailed labelling was performed on a self-developed annotation system based on iPad. We built the model based on DeepLab v2 with ResNet-34. The model performance was tested on 194 test slides and compared with five pathologists. Furthermore, the generalisation ability of the learning model was tested by extra 168 slides (111 with adenoma) collected from two other hospitals.ResultsThe deep learning model achieved an area under the curve of 0.92 and obtained a slide-level accuracy of over 90% on slides from two other hospitals. The performance was on par with the performance of experienced pathologists, exceeding the average pathologist. By investigating the feature maps and cases misdiagnosed by the model, we found the concordance of thinking process in diagnosis between the deep learning model and pathologists.ConclusionsThe deep learning model for colorectal adenoma diagnosis is quite similar to pathologists. It is on-par with pathologists’ performance, makes similar mistakes and learns rational reasoning logics. Meanwhile, it obtains high accuracy on slides collected from different hospitals with significant staining configuration variations.


Epigenetics ◽  
2017 ◽  
Vol 12 (9) ◽  
pp. 751-763 ◽  
Author(s):  
Barbara Kinga Barták ◽  
Alexandra Kalmár ◽  
Bálint Péterfia ◽  
Árpád V. Patai ◽  
Orsolya Galamb ◽  
...  

2020 ◽  
Vol 10 (1) ◽  
Author(s):  
Lorenzo F. Ottaviano ◽  
Xueying Li ◽  
Matthew Murray ◽  
Jesse T. Frye ◽  
Brandon E. Lung ◽  
...  

2020 ◽  
Vol 91 (6) ◽  
pp. AB44
Author(s):  
Kazuya Miyaguchi ◽  
Kaoru Takabayashi ◽  
Daisuke Saito ◽  
Yoshikazu Tsuzuki ◽  
Naoki Hosoe ◽  
...  

2018 ◽  
Vol 2018 ◽  
pp. 1-5
Author(s):  
Juan Lasa ◽  
Astrid Rausch ◽  
Luis Florez Bracho ◽  
Josefina Altamirano ◽  
Daniela Speisky ◽  
...  

Background. The association between celiac disease and colorectal neoplasia has been previously studied, but the question whether recently diagnosed celiac patients show an increased colorectal adenoma prevalence remains unanswered. Aims. To compare the prevalence of colorectal adenomas between adult patients with a recent diagnosis of celiac disease versus healthy controls. Materials and Methods. A retrospective case-control study was undertaken. Patients with a diagnosis of celiac disease at an age of 45 years or more who undertook colonoscopy six months before or six months after the initiation of a gluten-free diet were enrolled as cases. Asymptomatic subjects undertaking screening colonoscopy were recruited as controls in a 2 : 1 fashion. The prevalence of colorectal adenomas and the prevalence of advanced adenomas were compared between groups. Results. 57 celiac disease patients and 118 controls were enrolled. There was a greater prevalence of female patients among the celiac group, with no significant differences in terms of age. There were more obese patients among controls and a higher proportion of tabaquism among celiac patients. Adenoma prevalence was significantly higher among celiac patients (47.37% versus 27.97%, p=0.01). Advanced adenoma detection was not different between groups. Conclusion. Adult patients with a recent diagnosis of celiac disease have an increased prevalence of colorectal adenomas.


2011 ◽  
Vol 73 (3) ◽  
pp. 637 ◽  
Author(s):  
Mitsunobu Matsushita ◽  
Toshihiro Tanaka ◽  
Go Sekimoto ◽  
Takahiro Wakamatsu ◽  
Naoyuki Danbara ◽  
...  

2019 ◽  
Vol 90 (5) ◽  
pp. 826-834 ◽  
Author(s):  
Carlos Eduardo Oliveira dos Santos ◽  
Daniele Malaman ◽  
Júlio Carlos Pereira-Lima ◽  
Fernanda de Quadros Onófrio ◽  
Jurandir Marcondes Ribas Filho

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