Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein

2021 ◽  
Vol 565 ◽  
pp. 85-90
Author(s):  
Shigeyuki Matsumoto ◽  
Haruka Taniguchi-Tamura ◽  
Mitsugu Araki ◽  
Takashi Kawamura ◽  
Ryo Miyamoto ◽  
...  
1990 ◽  
Vol 87 (12) ◽  
pp. 4849-4853 ◽  
Author(s):  
A. T. Brunger ◽  
M. V. Milburn ◽  
L. Tong ◽  
A. M. deVos ◽  
J. Jancarik ◽  
...  

2008 ◽  
Vol 28 (11) ◽  
pp. 3663-3671 ◽  
Author(s):  
Hideaki Shimizu ◽  
Asako Tosaki ◽  
Kumi Kaneko ◽  
Tamao Hisano ◽  
Takashi Sakurai ◽  
...  

ABSTRACT BACE1 (β-secretase) is a transmembrane aspartic protease that cleaves the β-amyloid precursor protein and generates the amyloid β peptide (Aβ). BACE1 cycles between the cell surface and the endosomal system many times and becomes activated interconvertibly during its cellular trafficking, leading to the production of Aβ. Here we report the crystal structure of the catalytically active form of BACE1. The active form has novel structural features involving the conformation of the flap and subsites that promote substrate binding. The functionally essential residues and water molecules are well defined and play a key role in the iterative activation of BACE1. We further describe the crystal structure of the dehydrated form of BACE1, showing that BACE1 activity is dependent on the dynamics of a catalytically required Asp-bound water molecule, which directly affects its catalytic properties. These findings provide insight into a novel regulation of BACE1 activity and elucidate how BACE1 modulates its activity during cellular trafficking.


FEBS Letters ◽  
2012 ◽  
Vol 586 (12) ◽  
pp. 1715-1718 ◽  
Author(s):  
Shin Muraoka ◽  
Fumi Shima ◽  
Mitsugu Araki ◽  
Tomoko Inoue ◽  
Akiko Yoshimoto ◽  
...  

2012 ◽  
Vol 51 (42) ◽  
pp. 10647-10651 ◽  
Author(s):  
Ina C. Rosnizeck ◽  
Michael Spoerner ◽  
Tobias Harsch ◽  
Sandra Kreitner ◽  
Daniel Filchtinski ◽  
...  
Keyword(s):  

2020 ◽  
Vol 118 (3) ◽  
pp. 42a
Author(s):  
Shigeyuki Matsumoto ◽  
Haruka Taniguchi-Tamura ◽  
Mitsugu Araki ◽  
Takashi Kawamura ◽  
Ryo Miyamoto ◽  
...  

Proceedings ◽  
2019 ◽  
Vol 22 (1) ◽  
pp. 92
Author(s):  
Paula Morales ◽  
Laura Figuerola-Asencio ◽  
Dow H. Hurst ◽  
Pingwei Zhao ◽  
Mary E. Abood ◽  
...  

Docking studies of identified GPR55 ligands using a GPR55 inactive state model allow rationalizing key structural features involved in ligand–receptor binding. On this molecular basis, we have designed novel quinolone sulfonamide derivatives with optimized potency and efficacy. These novel molecules compounds are being synthesized and evaluated using a β-arrestin recruitment assay in CHO cells overexpressing human GPR55 and βarr2-GFP.


2019 ◽  
Author(s):  
Marion Alriquet ◽  
Adrían Martínez-Limón ◽  
Gerd Hanspach ◽  
Martin Hengesbach ◽  
Gian G. Tartaglia ◽  
...  

ABSTRACTTransient sequestration of proteins and RNA is an essential principle of cellular reaction to stress. Compared to polypeptides, less is known about the role of RNA released from polysomes during acute proteostasis stress. Using quantitative mass spectrometry, we identified a set of proteins assembled by free RNA in the heat-shocked mammalian cytosol. RNA-associated proteins displayed higher disorder and larger size, which supports the role of multivalent interactions during the initial phase of the RNA granule formation. Structural features of the free RNA interactors defined them as a subset of RNA-binding proteins. The interactome contained preferentially the active form of eIF2α. The interaction between assembled proteins in vivo required RNA. The reconstitution of the association process in vitro indicated to the multimolecular basis for the increased binding to RNA upon heat shock in the cytosol. Our results reveal how free RNA can participate in reorganization of cellular functions during proteostasis stress.


2019 ◽  
Vol 21 (1) ◽  
pp. 141 ◽  
Author(s):  
Tyler E. Mattox ◽  
Xi Chen ◽  
Yulia Y. Maxuitenko ◽  
Adam B. Keeton ◽  
Gary A. Piazza

Oncogenic mutations in RAS genes result in the elevation of cellular active RAS protein levels and increased signal propagation through downstream pathways that drive tumor cell proliferation and survival. These gain-of-function mutations drive over 30% of all human cancers, presenting promising therapeutic potential for RAS inhibitors. However, many have deemed RAS “undruggable” after nearly 40 years of failed drug discovery campaigns aimed at identifying a RAS inhibitor with clinical activity. Here we review RAS nucleotide cycling and the opportunities that RAS biochemistry presents for developing novel RAS inhibitory compounds. Additionally, compounds that have been identified to inhibit RAS by exploiting various aspects of RAS biology and biochemistry will be covered. Our current understanding of the biochemical properties of RAS, along with reports of direct-binding inhibitors, both provide insight on viable strategies for the discovery of novel clinical candidates with RAS inhibitory activity.


Author(s):  
Endang R. Purba ◽  
Ei-ichiro Saita ◽  
Ichiro N. Maruyama

The epidermal growth factor receptor (EGFR) plays vital roles in cellular processes including cell proliferation, survival, motility and differentiation. Dysregulated activation of the receptor is often implicated in human cancers. EGFR is synthesized as a single-pass transmembrane protein, which consists of an extracellular ligand-binding domain and an intracellular kinase domain separated by a single transmembrane domain. The receptor is activated by a variety of polypeptide ligands such as epidermal growth factor and transforming growth factor α. It has long been thought that EGFR is activated by ligand-induced dimerization of the receptor monomer, which brings intracellular kinase domains into close proximity for trans-autophosphorylation. An increasing number of diverse studies, however, demonstrate that EGFR is present as a pre-formed, yet inactive, dimer prior to ligand binding. Furthermore, recent progress in structural studies has provided insight into conformational changes during the activation of a pre-formed EGFR dimer. Upon ligand binding to the extracellular domain of EGFR, its transmembrane domains rotate or twist parallel to the plane of the cell membrane, resulting in reorientation of the intracellular kinase domain dimer from a symmetric inactive configuration to an asymmetric active form (the “rotation model”). This model is also able to explain how oncogenic mutations activate the receptor in the absence of ligand without assuming that the mutations induce receptor dimerization. In this review, we discuss mechanisms underlying ligand-induced activation of the preformed EGFR dimer, as well as how oncogenic mutations constitutively activate the receptor dimer, based on the rotation model.


2011 ◽  
Vol 286 (45) ◽  
pp. 39644-39653 ◽  
Author(s):  
Mitsugu Araki ◽  
Fumi Shima ◽  
Yoko Yoshikawa ◽  
Shin Muraoka ◽  
Yuichi Ijiri ◽  
...  

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