Microscopic impedance cytometry for quantifying single cell shape

2021 ◽  
pp. 113521
Author(s):  
Tao Tang ◽  
Xun Liu ◽  
Ryota Kiya ◽  
Yigang Shen ◽  
Yapeng Yuan ◽  
...  
Talanta ◽  
2021 ◽  
pp. 122571
Author(s):  
Shu Zhu ◽  
Xiaozhe Zhang ◽  
Zheng Zhou ◽  
Yu Han ◽  
Nan Xiang ◽  
...  

2021 ◽  
Vol 173 ◽  
pp. 112808
Author(s):  
Douwe S. de Bruijn ◽  
Paul M. ter Braak ◽  
Dedmer B. Van de Waal ◽  
Wouter Olthuis ◽  
Albert van den Berg

2019 ◽  
Vol 201 (11) ◽  
Author(s):  
Kristin Little ◽  
Jacob Austerman ◽  
Jenny Zheng ◽  
Karine A. Gibbs

ABSTRACTSwarming on rigid surfaces requires movement of cells as individuals and as a group of cells. For the bacteriumProteus mirabilis, an individual cell can respond to a rigid surface by elongating and migrating over micrometer-scale distances. Cells can form groups of transiently aligned cells, and the collective population is capable of migrating over centimeter-scale distances. To address howP. mirabilispopulations swarm on rigid surfaces, we asked whether cell elongation and single-cell motility are coupled to population migration. We first measured the relationship between agar concentration (a proxy for surface rigidity), single-cell phenotypes, and swarm colony phenotypes. We find that cell elongation and single-cell motility are coupled with population migration on low-percentage hard agar (1% to 2.5%) and become decoupled on high-percentage hard agar (>2.5%). Next, we evaluate how disruptions in lipopolysaccharide (LPS), specifically the O-antigen components, affect responses to hard agar. We find that LPS is not essential for elongation and motility of individual cells, as predicted, and instead functions to broaden the range of agar concentrations on which cell elongation and motility are coupled with population migration. These findings demonstrate that cell elongation and motility are coupled with population migration under a permissive range of surface conditions; increasing agar concentration is sufficient to decouple these behaviors. Since swarm colonies cover greater distances when these steps are coupled than when they are not, these findings suggest that collective interactions amongP. mirabiliscells might be emerging as a colony expands outwards on rigid surfaces.IMPORTANCEHow surfaces influence cell size, cell-cell interactions, and population migration for robust swarmers likeP. mirabilisis not fully understood. Here, we have elucidated how cells change length along a spectrum of sizes that positively correlates with increases in agar concentration, regardless of population migration. Single-cell phenotypes can be decoupled from collective population migration simply by increasing agar concentration. A cell’s lipopolysaccharides function to broaden the range of agar conditions under which cell elongation and single-cell motility remain coupled with population migration. In eukaryotes, the physical environment, such as a surface matrix, can impact cell development, shape, and migration. These findings support the idea that rigid surfaces similarly act on swarming bacteria to impact cell shape, single-cell motility, and collective population migration.


Lab on a Chip ◽  
2009 ◽  
Vol 9 (20) ◽  
pp. 2881 ◽  
Author(s):  
David Holmes ◽  
David Pettigrew ◽  
Christian H. Reccius ◽  
James D. Gwyer ◽  
Cees van Berkel ◽  
...  

2017 ◽  
Author(s):  
Randy M. Morgenstein ◽  
Benjamin P. Bratton ◽  
Joshua W. Shaevitz ◽  
Zemer Gitai

AbstractCell shape in bacteria is determined by the cell wall, which is synthesized by a variety of proteins whose actions are coordinated by the actin-like MreB protein. MreB uses local geometric cues of envelope curvature to avoid the cell poles and localize to specific regions of the cell body. However, it remains unclear whether MreB’s curvature preference is regulated by additional factors, and which features of MreB are essential for specific aspects of rod shape growth, such as cylindrical uniformity. Here we show that in addition to its previously-described role in mediating MreB motion, RodZ also modulates MreB polymer number and curvature preference. MreB polymer number and curvature localization can be regulated independently. Quantitative 3D measurements and a series of mutant strains show that among various properties of MreB, polymer number, total length of MreB polymers, and MreB curvature preference are the key determinants of cylindrical uniformity, a measure of the variability in radius within a single cell. Changes in the values of these parameters are highly predictive of the resulting changes in cell shape (r2=0.93). Our data suggest a model for rod shape in which RodZ promotes the assembly of multiple long MreB polymers that ensure the growth of a uniform cylinder.


2020 ◽  
Vol 31 (7) ◽  
pp. 655-666 ◽  
Author(s):  
Xiongtao Ruan ◽  
Gregory R. Johnson ◽  
Iris Bierschenk ◽  
Roland Nitschke ◽  
Melanie Boerries ◽  
...  

Images of differentiating PC12 cells were used to construct models of cell shape, nuclear shape, and mitochondrial distribution. Likely trajectories that a single cell would have followed if it had been observed at each time point were found, and synthetic movies made that show the extensive cell–cell variation in rate and extent of differentiation.


2019 ◽  
Vol 115 (1) ◽  
Author(s):  
Payam Haftbaradaran Esfahani ◽  
Zaher ElBeck ◽  
Sven Sagasser ◽  
Xidan Li ◽  
Mohammad Bakhtiar Hossain ◽  
...  

AbstractCardiomyocytes undergo considerable changes in cell shape. These can be due to hemodynamic constraints, including changes in preload and afterload conditions, or to mutations in genes important for cardiac function. These changes instigate significant changes in cellular architecture and lead to the addition of sarcomeres, at the same time or at a later stage. However, it is currently unknown whether changes in cell shape on their own affect gene expression and the aim of this study was to fill that gap in our knowledge. We developed a single-cell morphotyping strategy, followed by single-cell RNA sequencing, to determine the effects of altered cell shape in gene expression. This enabled us to profile the transcriptomes of individual cardiomyocytes of defined geometrical morphotypes and characterize them as either normal or pathological conditions. We observed that deviations from normal cell shapes were associated with significant downregulation of gene expression and deactivation of specific pathways, like oxidative phosphorylation, protein kinase A, and cardiac beta-adrenergic signaling pathways. In addition, we observed that genes involved in apoptosis of cardiomyocytes and necrosis were upregulated in square-like pathological shapes. Mechano-sensory pathways, including integrin and Src kinase mediated signaling, appear to be involved in the regulation of shape-dependent gene expression. Our study demonstrates that cell shape per se affects the regulation of the transcriptome in cardiac myocytes, an effect with possible implications for cardiovascular disease.


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