scholarly journals Multiple-depth mapping of soil properties using a visible and near infrared real-time soil sensor for a paddy field

2015 ◽  
Vol 8 (1) ◽  
pp. 13-17 ◽  
Author(s):  
Siti Noor Aliah Baharom ◽  
Sakae Shibusawa ◽  
Masakazu Kodaira ◽  
Ryuhei Kanda
2019 ◽  
Vol 11 (23) ◽  
pp. 2819 ◽  
Author(s):  
Muhammad Abdul Munnaf ◽  
Said Nawar ◽  
Abdul Mounem Mouazen

Visible and near infrared (vis–NIR) diffuse reflectance spectroscopy has made invaluable contributions to the accurate estimation of soil properties having direct and indirect spectral responses in NIR spectroscopy with measurements made in laboratory, in situ or using on-line (while the sensor is moving) platforms. Measurement accuracies vary with measurement type, for example, accuracy is higher for laboratory than on-line modes. On-line measurement accuracy deteriorates further for secondary (having indirect spectral response) soil properties. Therefore, the aim of this study is to improve on-line measurement accuracy of secondary properties by fusion of laboratory and on-line scanned spectra. Six arable fields were scanned using an on-line sensing platform coupled with a vis–NIR spectrophotometer (CompactSpec by Tec5 Technology for spectroscopy, Germany), with a spectral range of 305–1700 nm. A total of 138 soil samples were collected and used to develop five calibration models: (i) standard, using 100 laboratory scanned samples; (ii) hybrid-1, using 75 laboratory and 25 on-line samples; (iii) hybrid-2, using 50 laboratory and 50 on-line samples; (iv) hybrid-3, using 25 laboratory and 75 on-line samples, and (v) real-time using 100 on-line samples. Partial least squares regression (PLSR) models were developed for soil pH, available potassium (K), magnesium (Mg), calcium (Ca), and sodium (Na) and quality of models were validated using an independent prediction dataset (38 samples). Validation results showed that the standard models with laboratory scanned spectra provided poor to moderate accuracy for on-line prediction, and the hybrid-3 and real-time models provided the best prediction results, although hybrid-2 model with 50% on-line spectra provided equally good results for all properties except for pH and Na. These results suggest that either the real-time model with exclusively on-line spectra or the hybrid model with fusion up to 50% (except for pH and Na) and 75% on-line scanned spectra allows significant improvement of on-line prediction accuracy for secondary soil properties using vis–NIR spectroscopy.


2013 ◽  
Vol 21 (7) ◽  
pp. 810-816
Author(s):  
Wen-Jun DONG ◽  
Pei-Zhi XU ◽  
Ren-Zhi ZHANG ◽  
Xu HUANG ◽  
Hua-Ping ZHENG ◽  
...  

2021 ◽  
Vol 4 (1) ◽  
Author(s):  
Yusaku Hontani ◽  
Mikhail Baloban ◽  
Francisco Velazquez Escobar ◽  
Swetta A. Jansen ◽  
Daria M. Shcherbakova ◽  
...  

AbstractNear-infrared fluorescent proteins (NIR FPs) engineered from bacterial phytochromes are widely used for structural and functional deep-tissue imaging in vivo. To fluoresce, NIR FPs covalently bind a chromophore, such as biliverdin IXa tetrapyrrole. The efficiency of biliverdin binding directly affects the fluorescence properties, rendering understanding of its molecular mechanism of major importance. miRFP proteins constitute a family of bright monomeric NIR FPs that comprise a Per-ARNT-Sim (PAS) and cGMP-specific phosphodiesterases - Adenylyl cyclases - FhlA (GAF) domain. Here, we structurally analyze biliverdin binding to miRFPs in real time using time-resolved stimulated Raman spectroscopy and quantum mechanics/molecular mechanics (QM/MM) calculations. Biliverdin undergoes isomerization, localization to its binding pocket, and pyrrolenine nitrogen protonation in <1 min, followed by hydrogen bond rearrangement in ~2 min. The covalent attachment to a cysteine in the GAF domain was detected in 4.3 min and 19 min in miRFP670 and its C20A mutant, respectively. In miRFP670, a second C–S covalent bond formation to a cysteine in the PAS domain occurred in 14 min, providing a rigid tetrapyrrole structure with high brightness. Our findings provide insights for the rational design of NIR FPs and a novel method to assess cofactor binding to light-sensitive proteins.


Talanta ◽  
2021 ◽  
Vol 228 ◽  
pp. 122184
Author(s):  
Qingfeng Xia ◽  
Shumin Feng ◽  
Jiaxin Hong ◽  
Guoqiang Feng

2020 ◽  
pp. 1-1
Author(s):  
Kaiyuan Zheng ◽  
Chuantao Zheng ◽  
Haipeng Zhang ◽  
Junhao Li ◽  
Zidi Liu ◽  
...  

2003 ◽  
Vol 5 (20) ◽  
pp. 4455-4460 ◽  
Author(s):  
Susana C. Cruz ◽  
Petra J. Aarnoutse ◽  
Gadi Rothenberg ◽  
Johan A. Westerhuis ◽  
Age K. Smilde ◽  
...  

Author(s):  
Tamim Ahmed ◽  
Khandker Sadia Rahman ◽  
Sk Subrina Shawlin ◽  
Mohammad Hasan ◽  
Arnab Bhattacharjee ◽  
...  

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