Intermolecular disulfide bonds between unpaired cysteines retard the C-terminal trans-cleavage of Npu DnaE

2018 ◽  
Vol 118 ◽  
pp. 6-12 ◽  
Author(s):  
Yanran Xu ◽  
Lei Zhang ◽  
Buyong Ma ◽  
Lifu Hu ◽  
Huili Lu ◽  
...  
2008 ◽  
Vol 415 (2) ◽  
pp. 275-288 ◽  
Author(s):  
Satish Kumar ◽  
Vijay Kumar Ravi ◽  
Rajaram Swaminathan

The early intermediates in the protein aggregation pathway, the elusive soluble aggregates, play a pivotal role in growth and maturation of ordered aggregates such as amyloid fibrils. Blocking the growth of soluble oligomers is an effective strategy to inhibit aggregation. To decipher the molecular mechanisms and develop better strategies to arrest aggregation, it is imperative to understand how the size, molecular dynamics, activity and growth kinetics of soluble aggregates are affected when aggregation is inhibited. With this objective, in the present study we have investigated the influence of additives such as SDS, CTAB (cetyltrimethylammonium bromide) and DTT (dithiothreitol) on the slow aggregation of HEWL (hen eggwhite lysozyme) at pH 12.2. For this purpose, techniques such as steady-state and time-resolved fluorescence anisotropy of covalently labelled dansyl probe, gel-filtration chromatography, estimation of free thiol groups, thioflavin T and ANS (8-anilinonaphthalene-1-sulfonic acid) fluorescence, CD and atomic-force microscopy were employed to monitor the soluble oligomers over a period spanning 30 days. The results of the present study reveal that: (i) the spontaneous formation of soluble aggregates is irreversible and abolishes activity; (ii) the initial growth of aggregates (0–24 h) is promoted by a gradual increase in the exposure of hydrophobic surfaces; (iii) subsequently intermolecular disulfide bonds are critical for the assembly and stability of aggregates; (iv) the tight molecular packing inside large aggregates which contributed to slow (∼5 ns) and restricted segmental motion of dansyl probe was clearly loosened up in the presence of additives, enabling fast (1–2 ns) and free motion (unlike DTT, the size of lysozyme complexes with surfactants, was large, due to a conglomeration of proteins and surfactants); (v) the aggregates show reduced helical content compared with native lysozyme, except in the presence of SDS; and (vi) DTT was more potent than SDS/CTAB in arresting the growth of aggregates.


Blood ◽  
2007 ◽  
Vol 110 (11) ◽  
pp. 2711-2711
Author(s):  
Reinhard Schneppenheim ◽  
Olivier Marggraf ◽  
Heike Eckert ◽  
Tobias Obser ◽  
Florian Oyen ◽  
...  

Abstract Background: Multimer analysis of von Willebrand factor (VWF) is a most important technique to classify patients with von Willebrand disease (VWD) type 2. Besides “classical” multimer patterns a “smeary” appearance of individual VWF oligomers is increasingly observed and has previously been regarded as a pre-analytical artifact. Objective: To phenotypically and genotypically assess the molecular background of “smeary” VWF multimers. Patients and methods: Samples of 8 VWD patients were analyzed in our reference lab (UB) for further classification and molecular testing. Multimer profiles were assessed by intermediate resolution gels. VWF:CB and VWF:GpIb binding were used as functional assays. VWF gene mutation analysis was performed in all index cases (IC). The causal relationship between genotype and phenotype was studied by analyzing recombinant mutants in comparison to wildtype VWF. Results: In all IC the phenotype correlated with particular mutations in the VWF D3 domain (G1172D), the A1 domain (R1315C, R1374S, R1374C, R1399C), the D4 domain (C2257R), the C1 domain (R2464C) and in the region close to the CK domain (C2671Y), respectively. The multimer patterns of recombinant mutant VWF was of a “smeary” appearance and closely resembled those of mutant plasma VWF. Mutations in the A1 domain additionally correlated with severe GpIb binding deficiency. Conclusions: Our data suggest a molecular cause of the “smeary” multimer structure rather than pre-analytical artifacts. Most of the mutations identified involved cysteine residues suggesting an influence on the VWF secondary structure which is determined by intra- and intermolecular disulfide bonds. This could explain the peculiar multimer appearance. The functional deficits, however, seem to depend on the location of the mutations with a significant impact on GpIb binding of mutants in the A1 domain.


2013 ◽  
Vol 450 (1) ◽  
pp. 107-114 ◽  
Author(s):  
Mélanie Rouleau ◽  
Pierre Collin ◽  
Judith Bellemare ◽  
Mario Harvey ◽  
Chantal Guillemette

The oligomerization of UGTs [UDP (uridine diphosphate)-glucuronosyltransferases] modulates their enzyme activities. Recent findings also indicate that glucuronidation is negatively regulated by the formation of inactive oligomeric complexes between UGT1A enzymes [i1 (isoform 1)] and an enzymatically inactive alternatively spliced i2 (isoform 2). In the present paper, we assessed whether deletion of the UGT-interacting domains previously reported to be critical for enzyme function might be involved in i1–i2 interactions. The bilirubin-conjugating UGT1A1 was used as a prototype. We also explored whether intermolecular disulfide bonds are involved in i1–i2 interactions and the potential role of selected cysteine residues. Co-immunoprecipitation assays showed that UGT1A1 lacking the SP (signal peptide) alone or also lacking the transmembrane domain (absent from i2) did not self-interact, but still interacted with i2. The deletion of other N- or C-terminal domains did not compromise i1–i2 complex formation. Under non-reducing conditions, we also observed formation of HMWCs (high-molecular-mass complexes) for cells overexpressing i1 and i2. The presence of UGTs in these complexes was confirmed by MS. Mutation of individual cysteine residues throughout UGT1A1 did not compromise i1–i1 or i1–i2 complex formation. These findings are compatible with the hypothesis that the interaction between i1 and i2 proteins (either transient or stable) involves binding of more than one domain that probably differs from those involved in i1–i1 interactions.


BIOPHYSICS ◽  
2018 ◽  
Vol 63 (2) ◽  
pp. 154-161 ◽  
Author(s):  
M. G. Sharapov ◽  
N. V. Penkov ◽  
S. V. Gudkov ◽  
R. G. Goncharov ◽  
V. I. Novoselov ◽  
...  

Blood ◽  
2015 ◽  
Vol 126 (23) ◽  
pp. 3670-3670
Author(s):  
Kevin M Watanabe-Smith ◽  
Cristina E. Tognon ◽  
Jeffrey W. Tyner ◽  
Brian J. Druker ◽  
Anupriya Agarwal

Abstract Background Colony stimulating factor 2 receptor beta (CSF2RB) is the shared beta-chain receptor and an essential component for IL-3, IL-5 and GM-CSF receptor activation. In the context of GM-CSF signaling, the ligand-specific alpha chain (CSF2RA) complexes with CSF2RB and GM-CSF ligand, forming a dodecameric complex in which the proximity of CSF2RB subunits allows associated JAK2 kinases to trans-phosphorylate. CSF2RB signals through several pathways, including JAK2/STAT5, PI3K/AKT and MEK/ERK to promote survival, proliferation and differentiation. Several studies have demonstrated that mutations in CSF2RB can lead to cellular transformation in vitro, but no oncogenic mutations have yet been identified in primary leukemia samples. Here we report the first such mutation, found in a pediatric patient with T-cell acute lymphoblastic leukemia (T-ALL), resulting in the formation of intermolecular disulfide bonds, prolonged protein half-life, and ligand-independent receptor activation that is sensitive to JAK2 kinase inhibition. Methods and Results Through an ongoing effort to identify oncogenic mutations in primary leukemias, we performed whole-exome sequencing on 18 T-ALL patient samples. CSF2RB R461C was identified in a pediatric T-ALL and stably expressed in Ba/F3 cells to test its capacity to confer factor-independent growth. R461C consistently and rapidly transformed Ba/F3 cells, while wild-type (WT) and vector controls did not. R461C expression resulted in a substantial accumulation of CSF2RB protein relative to WT, both prior to and following Ba/F3 transformation. Cycloheximide time-course experiments demonstrated that the R461C mutant possessed a prolonged surface half-life relative to WT CSF2RB (3.6 vs. 6.5 hours; p<0.01). Given the presence of a novel cysteine in the R461C mutant, we hypothesized that the increased surface stability could result from abnormal, disulfide-linked receptor oligomerization. To test this, we compared the WT and R461C receptors using a non-reducing PAGE immunoblot and observed higher molecular weight, CSF2RB-containing complexes of 500 KDa only in R461C-expressing cells. The size of this complex approximately corresponds to a CSF2RB tetramer and could account for receptor activation and accumulation. The UniProt-listed and commonly used transmembrane domain for CSF2RB (444-460) indicates R461C is a cytoplasmic residue and therefore unlikely to form a disulfide bond in the reducing conditions of the cytoplasm. To resolve this discrepancy, we modeled the transmembrane domain of CSF2RB using several advanced prediction platforms and concluded that residue 461 lies well within the membrane spanning region for both the WT and mutant receptors. While the CSF2RB transmembrane domain has not been empirically studied, modern models delineate that the domain spans residues 443-465, thereby creating the potential for cysteines 461 and 463 to form intermolecular disulfide bonds with homologous or heterogeneous receptor chains. Using immunoblot analysis, we showed that transformed Ba/F3 cells expressing CSF2RB R461C exhibited constitutive receptor phosphorylation and signaled through several pathways, including STAT-1, -3, and -5, AKT/mTOR1, MEK/ERK, and SRC. In a small-molecule inhibitor screen, several JAK2 inhibitors (ruxolitinib, tofacitinib, AZD1480) achieved significantly lower IC50 concentrations in CSF2RB R461C cells relative to WT (p<0.05). These results indicate that R461C primarily signals through JAK2, which is consistent with ligand-independent activation of CSF2RB. Conclusions We have demonstrated for the first time that a novel and actionable primary CSF2RB mutation confers factor-independent growth, receptor accumulation, and constitutive JAK/STAT pathway activation. Furthermore, we identified a novel mechanism of constitutive CSF2RB activation where incorporation of a transmembrane cysteine results in novel intermolecular disulfide bonds that could account for constitutive signaling. JAK inhibitors blocked the growth of R461C-transformed cells, thereby providing a potential rationale for using JAK inhibitors to treat patients with CSF2RB-mutated leukemia. Future research could also utilize R461C to study the impact of the transmembrane domain on CSF2RB receptor complex formation and recycling. Disclosures Tyner: Aptose Biosciences: Research Funding; Constellation Pharmaceuticals: Research Funding; Array Biopharma: Research Funding; Janssen Pharmaceuticals: Research Funding; Incyte: Research Funding. Druker:Aptose Therapeutics, Inc (formerly Lorus): Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees; Novartis Pharmaceuticals: Research Funding; McGraw Hill: Patents & Royalties; Oncotide Pharmaceuticals: Research Funding; Millipore: Patents & Royalties; Henry Stewart Talks: Patents & Royalties; Leukemia & Lymphoma Society: Membership on an entity's Board of Directors or advisory committees, Research Funding; Fred Hutchinson Cancer Research Center: Research Funding; Cylene Pharmaceuticals: Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees; Blueprint Medicines: Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees; AstraZeneca: Consultancy; MolecularMD: Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees; Bristol-Myers Squibb: Research Funding; Gilead Sciences: Consultancy, Membership on an entity's Board of Directors or advisory committees; Oregon Health & Science University: Patents & Royalties; CTI Biosciences: Consultancy, Equity Ownership, Membership on an entity's Board of Directors or advisory committees; Sage Bionetworks: Research Funding; Roche TCRC, Inc.: Consultancy, Membership on an entity's Board of Directors or advisory committees; ARIAD: Research Funding. Agarwal:CTI BioPharma: Research Funding.


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