scholarly journals In silico investigation of lysostaphin-producing novel strains as an enzybiotic against methicillin-resistant Staphylococcus aureus

2021 ◽  
pp. 100623
Author(s):  
Seyed Amir Hossein Mohammadzadeh Hosseini Moghri ◽  
Saeed Ghanbari Hassan Kiadeh ◽  
Somayeh Rahaiee
Molecules ◽  
2014 ◽  
Vol 19 (4) ◽  
pp. 4491-4509 ◽  
Author(s):  
Claudia Avitia-Domínguez ◽  
Erick Sierra-Campos ◽  
José Salas-Pacheco ◽  
Hugo Nájera ◽  
Arturo Rojo-Domínguez ◽  
...  

Antibiotics ◽  
2021 ◽  
Vol 10 (8) ◽  
pp. 934
Author(s):  
Mahmoud A. A. Ibrahim ◽  
Khlood A. A. Abdeljawaad ◽  
Alaa H. M. Abdelrahman ◽  
Othman R. Alzahrani ◽  
Fahad M. Alshabrmi ◽  
...  

Penicillin-binding proteins (PBPs) catalyze the final stages for peptidoglycan cell-wall bio-synthesis. Mutations in the PBP2a subunit can attenuate β-lactam antibiotic activity, resulting in unimpeded cell-wall formation and methicillin-resistant Staphylococcus aureus (MRSA). A double mutation in PBP2a (i.e., N146K and E150K) is resistant to β-lactam inhibitors; however, (E)-3-(2-(4-cyanostyryl)-4-oxoquinazolin-3(4H)-yl) benzoic acid (QNZ), a heterocyclic antibiotic devoid of a β-lactam ring, interacts non-covalently with PBP2a allosteric site and inhibits PBP enzymatic activity. In the search for novel inhibitors that target this PBP2a allosteric site in acidic medium, an in silico screening was performed. Chemical databases including eMolecules, ChEMBL, and ChEBI were virtually screened for candidate inhibitors with a physicochemical similarity to QNZ. PBP2a binding affinities from the screening were calculated based on molecular docking with co-crystallized ligand QNZ serving as a reference. Molecular minimization calculations were performed for inhibitors with docking scores lower than QNZ (calc. −8.3 kcal/mol) followed by combined MD simulations and MM-GBSA binding energy calculations. Compounds eMol26313223 and eMol26314565 exhibited promising inhibitor activities based on binding affinities (ΔGbinding) that were twice that of QNZ (−38.5, −34.5, and −15.4 kcal/mol, respectively). Structural and energetic analyses over a 50 ns MD simulation revealed high stability for the inhibitors when complexed with the double mutated PBP2a. The pharmacokinetic properties of the two inhibitors were predicted using an in silico ADMET analysis. Calculated binding affinities hold promise for eMol26313223 and eMol26314565 as allosteric inhibitors of PBP2a in acidic medium and establish that further in vitro and in vivo inhibition experimentation is warranted.


2012 ◽  
Vol 2 (1) ◽  
pp. 9-13
Author(s):  
Jalil Fallah Mehrabadi ◽  
Hamideh Rouhani Nejad ◽  
Mohammad Reza Pourmand ◽  
Mohammad Reza Zolfaghari

Author(s):  
Paul Awolade ◽  
Nosipho Cele ◽  
Oluwakemi Ebenezer ◽  
Nagaraju Kerru ◽  
Lalitha Gummidi ◽  
...  

Background: The persistence of breast cancer as the leading cause of mortality among women, coupled with drug resistance to tamoxifen, the standard endocrine therapy for the disease, exacts fixated attention. To this effect, molecular hybridisation offers an attractive route to drugs with improved bioactivity profile. Objective: The primary goal of this study was to examine the potentials of 1H-1,2,3-triazole linked quinoline-isatin molecular hybrids as drug candidates against breast cancer and methicillin-resistant Staphylococcus aureus (MRSA) cells. Methods: The quinoline-isatin hybrids were synthesised via click chemistry-mediated molecular hybridisation strategy. Anti-breast cancer activity was determined in 3-(4,5-dimethylthiazol-z-yl)-2,5-diphenyltetrazolium bromide (MTT) assay using estrogen-responsive (ER+) MCF-7 and MDA-MB-231 (triple-negative breast cancer -TNBC) cells while antimicrobial efficacy was established via the broth dilution method. Also, the toxicity profile of potent compounds to non-cancerous cells was determined using human embryonic kidney cells (HEK293) and human red blood cells (hRBCs). In silico techniques were employed to predict the drug-like properties of potent compounds and understand their binding modes with estrogen receptor alpha (ERα). Results: Compounds 7g-i exhibited the strongest cytotoxicity to MCF-7 cells with IC50 values of 23.54, 23.66, and 32.50 μM, respectively. Interestingly, compound 7h also emerged as the best drug candidate against MDA-MB-231 and MRSA cells with IC50 = 71.40 μM and MIC80 = 27.34 μM, respectively. Structure-activity relationship analysis revealed that quinoline-2-carbaldehyde and 5,7- disubstituted isatin moieties confer desirable potency. These compounds showed no significant cytotoxic or haemolytic effects on HEK293 or hRBCs in vitro at their active concentrations; hence, eliciting their selectivity for cancer cells. In silico studies also presented the drugability of potent compounds and the likely structural features interacting with amino acid residues at the ligand-binding domain of ERα. Conclusion: These results suggest that the identified 1H-1,2,3-triazole-linked quinoline-isatin hybrids are viable chemotypes that can be adopted as templates for the development of new anti-breast cancer and anti-MRSA agents.


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