scholarly journals Genome analysis of a multidrug-resistant Streptococcus sanguis isolated from a throat swab of a child with scarlet fever

2020 ◽  
Vol 20 ◽  
pp. 1-3
Author(s):  
Yinyan Huang ◽  
Yuanyuan Wen ◽  
Qingjun Jia ◽  
Le Wang ◽  
Qinglin Cheng ◽  
...  
Gene ◽  
2021 ◽  
pp. 145603
Author(s):  
Susana Araújo ◽  
Marta Tacão ◽  
Rafael Baraúna ◽  
Rommel Ramos ◽  
Artur Silva ◽  
...  

2020 ◽  
Vol 17 (1) ◽  
pp. 1-7
Author(s):  
Poonam Sharma ◽  
Sushim K. Gupta ◽  
Eyitayo O. Adenipekun ◽  
John B. Barrett ◽  
Lari M. Hiott ◽  
...  

2018 ◽  
Vol 9 ◽  
Author(s):  
Yao-Ting Huang ◽  
Yu-Yu Tang ◽  
Jan-Fang Cheng ◽  
Zong-Yen Wu ◽  
Yan-Chiao Mao ◽  
...  

2020 ◽  
Vol 21 ◽  
pp. 246-251 ◽  
Author(s):  
Polly Soo Xi Yap ◽  
Azanna Ahmad Kamar ◽  
Chun Wie Chong ◽  
Ivan Kok Seng Yap ◽  
Cindy Shuan Ju Teh

2014 ◽  
Vol 2014 ◽  
pp. 1-7 ◽  
Author(s):  
Xin Yue Chan ◽  
Kah Ooi Chua ◽  
Kah Yan How ◽  
Wai-Fong Yin ◽  
Kok-Gan Chan

MostPseudomonas putidastrains are environmental microorganisms exhibiting a wide range of metabolic capability but certain strains have been reported as rare opportunistic pathogens and some emerged as multidrug resistantP. putida. This study aimed to assess the drug resistance profile of, via whole genome analysis,P. putidastrain T2-2 isolated from oral cavity. At the same time, we also compared the nonenvironmental strain with environmentally isolatedP. putida.In silicocomparative genome analysis with available reference strains ofP. putidashows that T2-2 has lesser gene counts on carbohydrate and aromatic compounds metabolisms, which suggested its little versatility. The detection of itseddgene also suggested T2-2’s catabolism of glucose via ED pathway instead of EMP pathway. On the other hand, its drug resistance profile was observed viain silicogene prediction and most of the genes found were in agreement with drug-susceptibility testing in laboratory by automated VITEK 2. In addition, the finding of putative genes of multidrug resistance efflux pump and ATP-binding cassette transporters in this strain suggests a multidrug resistant phenotype. In summary, it is believed that multiple metabolic characteristics and drug resistance inP. putidastrain T2-2 helped in its survival in human oral cavity.


BMC Genomics ◽  
2017 ◽  
Vol 18 (1) ◽  
Author(s):  
Victoria Chalker ◽  
◽  
Aleksey Jironkin ◽  
Juliana Coelho ◽  
Ali Al-Shahib ◽  
...  

2019 ◽  
Author(s):  
Cong Zhang ◽  
Chenling Ge ◽  
Xiaoye Wang ◽  
Deyuan Wei ◽  
Xun Li ◽  
...  

Abstract Background With the incidence of antibiotic resistance reaching crisis point, it is imperative to find alternative treatments for multidrug-resistant infections. Using phage for pathogen control might be a promising treatment option to combat bacterial resistance. Results In this study, a lytic phage, designated vB_KpnM _Bp5, was isolated from pig faecal sample in Nanning, Guangxi province of China, and classified as a member of the family Muscle virus based on electron microscopy analysis. A one-step growth curve of the phage at the optimal MOI revealed that the latent time was 40 min and the burst size was 24 PFU/cell, indicative of good lysis capacity. Whole genome sequencing showed that phage vB_KpnM _Bp5 had a small dsDNA genome of 43872 bp. BLASTn analysis showed that it shared 94.06% identity (94% genome coverage) with Klebsiella phage vB_KpnP_SU552A of complete genome idefix. RAST genome analysis showed that the phage had 50 ORFs due to its small genome size, and the number of functional proteins was consistent with other phages. To evaluate the therapeutic effect of Klebsiella pneumoniae infection in mice, the results showed that phages provided vB_KpnM _Bp5better protection. Conclusion The phage vB_KpnM _Bp5 had the characteristics of broad host spectrum, strong environmental adaptability, short incubation period, large outbreak amount, and can cure the mouse model infected by Klebsiella pneumoniae. These findings suggested that phage vB_KpnM _Bp5 could be considered a potential therapeutic or prophylactic candidate against Klebsiella pneumonia infection.


2019 ◽  
Vol 51 (10) ◽  
pp. 1079-1081
Author(s):  
Yunfen Hua ◽  
Mengsha Xu ◽  
Rui Wang ◽  
Yiyuan Zhang ◽  
Zhaoqin Zhu ◽  
...  

PLoS ONE ◽  
2011 ◽  
Vol 6 (10) ◽  
pp. e26578 ◽  
Author(s):  
Makrina Totsika ◽  
Scott A. Beatson ◽  
Sohinee Sarkar ◽  
Minh-Duy Phan ◽  
Nicola K. Petty ◽  
...  

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