scholarly journals Spatial and Single-Cell Transcriptional Profiling Identifies Functionally Distinct Human Dermal Fibroblast Subpopulations

2018 ◽  
Vol 138 (4) ◽  
pp. 811-825 ◽  
Author(s):  
Christina Philippeos ◽  
Stephanie B. Telerman ◽  
Bénédicte Oulès ◽  
Angela O. Pisco ◽  
Tanya J. Shaw ◽  
...  
2018 ◽  
Vol 138 (5) ◽  
pp. S230 ◽  
Author(s):  
C. Philippeos ◽  
S.B. Telerman ◽  
B. Oulès ◽  
A.O. Pisco ◽  
T.J. Shaw ◽  
...  

Author(s):  
Alex M. Ascensión ◽  
Sandra Fuertes-Álvarez ◽  
Olga Ibañez-Solé ◽  
Ander Izeta ◽  
Marcos J. Araúzo-Bravo

2018 ◽  
Author(s):  
Davis J. McCarthy ◽  
Raghd Rostom ◽  
Yuanhua Huang ◽  
Daniel J. Kunz ◽  
Petr Danecek ◽  
...  

AbstractDecoding the clonal substructures of somatic tissues sheds light on cell growth, development and differentiation in health, ageing and disease. DNA-sequencing, either using bulk or using single-cell assays, has enabled the reconstruction of clonal trees from frequency and co-occurrence patterns of somatic variants. However, approaches to systematically characterize phenotypic and functional variations between individual clones are not established. Here we present cardelino (https://github.com/PMBio/cardelino), a computational method for inferring the clone of origin of individual cells that have been assayed using single-cell RNA-seq (scRNA-seq). After validating our model using simulations, we apply cardelino to matched scRNA-seq and exome sequencing data from 32 human dermal fibroblast lines, identifying hundreds of differentially expressed genes between cells from different somatic clones. These genes are frequently enriched for cell cycle and proliferation pathways, indicating a key role for cell division genes in non-neutral somatic evolution.Key findingsA novel approach for integrating DNA-seq and single-cell RNA-seq data to reconstruct clonal substructure for single-cell transcriptomes.Evidence for non-neutral evolution of clonal populations in human fibroblasts.Proliferation and cell cycle pathways are commonly distorted in mutated clonal populations.


2021 ◽  
Vol 2 (3) ◽  
pp. 100673
Author(s):  
Shichen Liu ◽  
Maximilian Nguyen ◽  
Sahand Hormoz

Marine Drugs ◽  
2021 ◽  
Vol 19 (1) ◽  
pp. 38
Author(s):  
Chi-Jen Tai ◽  
Chiung-Yao Huang ◽  
Atallah F. Ahmed ◽  
Raha S. Orfali ◽  
Walied M. Alarif ◽  
...  

Chemical investigation of a Red Sea Spongia sp. led to the isolation of four new compounds, i.e., 17-dehydroxysponalactone (1), a carboxylic acid, spongiafuranic acid A (2), one hydroxamic acid, spongiafuranohydroxamic acid A (3), and a furanyl trinorsesterpenoid 16-epi-irciformonin G (4), along with three known metabolites (−)-sponalisolide B (5), 18-nor- 3,17-dihydroxy-spongia-3,13(16),14-trien-2-one (6), and cholesta-7-ene-3β,5α-diol-6-one (7). The biosynthetic pathway for the molecular skeleton of 1 and related compounds was postulated for the first time. Anti-inflammatory activity of these metabolites to inhibit superoxide anion generation and elastase release in N-formyl-methionyl-leucyl phenylalanine/cytochalasin B (fMLF/CB)-induced human neutrophil cells and cytotoxicity of these compounds toward three cancer cell lines and one human dermal fibroblast cell line were assayed. Compound 1 was found to significantly reduce the superoxide anion generation and elastase release at a concentration of 10 μM, and compound 5 was also found to display strong inhibitory activity against superoxide anion generation at the same concentration. Due to the noncytotoxic activity and the potent inhibitory effect toward the superoxide anion generation and elastase release, 1 and 5 can be considered to be promising anti-inflammatory agents.


2019 ◽  
Vol 139 (9) ◽  
pp. S268
Author(s):  
F. Nagelreiter ◽  
G. Yang ◽  
C. Heissenberger ◽  
Y. Gonskikh ◽  
N. Polacek ◽  
...  

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