Role of anionic micelles in self-assembling of fluorescent acridinium-based chemosensors for the detection of mercury (II) ions

Author(s):  
Tiziana Del Giacco ◽  
Raimondo Germani ◽  
Federico Purgatorio ◽  
Matteo Tiecco
2020 ◽  
Author(s):  
Ryan Weber ◽  
Martin McCullagh

<p>pH-switchable, self-assembling materials are of interest in biological imaging and sensing applications. Here we propose that combining the pH-switchability of RXDX (X=Ala, Val, Leu, Ile, Phe) peptides and the optical properties of coumarin creates an ideal candidate for these materials. This suggestion is tested with a thorough set of all-atom molecular dynamics simulations. We first investigate the dependence of pH-switchabiliy on the identity of the hydrophobic residue, X, in the bare (RXDX)<sub>4</sub> systems. Increasing the hydrophobicity stabilizes the fiber which, in turn, reduces the pH-switchabilty of the system. This behavior is found to be somewhat transferable to systems in which a single hydrophobic residue is replaced with a coumarin containing amino acid. In this case, conjugates with X=Ala are found to be unstable and both pHs while conjugates with X=Val, Leu, Ile and Phe are found to form stable β-sheets at least at neutral pH. The (RFDF)<sub>4</sub>-coumarin conjugate is found to have the largest relative entropy value of 0.884 +/- 0.001 between neutral and acidic coumarin ordering distributions. Thus, we posit that coumarin-(RFDF)<sub>4</sub> containing peptide sequences are ideal candidates for pH-sensing bioelectronic materials.</p>


2020 ◽  
Vol 27 (9) ◽  
pp. 923-929
Author(s):  
Gaurav Pandey ◽  
Prem Prakash Das ◽  
Vibin Ramakrishnan

Background: RADA-4 (Ac-RADARADARADARADA-NH2) is the most extensively studied and marketed self-assembling peptide, forming hydrogel, used to create defined threedimensional microenvironments for cell culture applications. Objectives: In this work, we use various biophysical techniques to investigate the length dependency of RADA aggregation and assembly. Methods: We synthesized a series of RADA-N peptides, N ranging from 1 to 4, resulting in four peptides having 4, 8, 12, and 16 amino acids in their sequence. Through a combination of various biophysical methods including thioflavin T fluorescence assay, static right angle light scattering assay, Dynamic Light Scattering (DLS), electron microscopy, CD, and IR spectroscopy, we have examined the role of chain-length on the self-assembly of RADA peptide. Results: Our observations show that the aggregation of ionic, charge-complementary RADA motifcontaining peptides is length-dependent, with N less than 3 are not forming spontaneous selfassemblies. Conclusion: The six biophysical experiments discussed in this paper validate the significance of chain-length on the epitaxial growth of RADA peptide self-assembly.


2019 ◽  
Vol 4 (1) ◽  
pp. 91-102 ◽  
Author(s):  
Ryan T. Shafranek ◽  
Joel D. Leger ◽  
Song Zhang ◽  
Munira Khalil ◽  
Xiaodan Gu ◽  
...  

Directed self-assembly in polymeric hydrogels allows tunability of thermal response and viscoelastic properties.


2012 ◽  
Vol 367 (1) ◽  
pp. 327-336 ◽  
Author(s):  
Gulnara A. Gainanova ◽  
Guzalia I. Vagapova ◽  
Victor V. Syakaev ◽  
Alsu R. Ibragimova ◽  
Farida G. Valeeva ◽  
...  
Keyword(s):  

2014 ◽  
pp. 384-405
Author(s):  
Gavin Buxton

In response to environmental concerns there is a drive towards developing renewable, and cleaner, energy technologies. Solar cells, which harvest energy directly from sunlight, may satisfy future energy requirements, but photovoltaic devices are currently too expensive to compete with existing fossil fuel based technologies. Polymer solar cells, on the other hand, are cheaper to produce than conventional inorganic solar cells and can be processed at relatively low temperatures. Furthermore, polymer solar cells can be fabricated on surfaces of arbitrary shape and flexibility, paving the way to a range of novel applications. Therefore, polymer solar cells are likely to play an important role in addressing, at least in some small part, man’s future energy needs. Here, the physics of polymer photovoltaics are reviewed, with particular emphasis on the computational tools which can be used to investigate these systems. In particular, the authors discuss the application of nanotechnology in self-assembling complex nanoscale structures which can be tailored to optimize photovoltaic performance. The role of computer simulations, in correlating these intricate structures with their performance, can not only reveal interesting new insights into current devices, but also elucidate potentially new systems with more optimized nanostructures.


Author(s):  
Gavin Buxton

In response to environmental concerns there is a drive towards developing renewable, and cleaner, energy technologies. Solar cells, which harvest energy directly from sunlight, may satisfy future energy requirements, but photovoltaic devices are currently too expensive to compete with existing fossil fuel based technologies. Polymer solar cells, on the other hand, are cheaper to produce than conventional inorganic solar cells and can be processed at relatively low temperatures. Furthermore, polymer solar cells can be fabricated on surfaces of arbitrary shape and flexibility, paving the way to a range of novel applications. Therefore, polymer solar cells are likely to play an important role in addressing, at least in some small part, man’s future energy needs. Here, the physics of polymer photovoltaics are reviewed, with particular emphasis on the computational tools which can be used to investigate these systems. In particular, the authors discuss the application of nanotechnology in self-assembling complex nanoscale structures which can be tailored to optimize photovoltaic performance. The role of computer simulations, in correlating these intricate structures with their performance, can not only reveal interesting new insights into current devices, but also elucidate potentially new systems with more optimized nanostructures.


Langmuir ◽  
2009 ◽  
Vol 25 (5) ◽  
pp. 3289-3296 ◽  
Author(s):  
Elisabeth Protopapa ◽  
Steven Maude ◽  
Amalia Aggeli ◽  
Andrew Nelson

2014 ◽  
Vol 2 (25) ◽  
pp. 4928-4936 ◽  
Author(s):  
Sandra Ward ◽  
Oliver Calderon ◽  
Ping Zhang ◽  
Matthew Sobchuk ◽  
Samantha N. Keller ◽  
...  

The ability to form self-organized thermotropic mesophases of amphiphilic cyclodextrins correlates well with their ability to establish an intermolecular H-bond network.


2005 ◽  
Vol 109 (3) ◽  
pp. 1192-1197 ◽  
Author(s):  
Mohammad Moniruzzaman ◽  
Pudupadi R. Sundararajan

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