bond network
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2022 ◽  
Vol 13 (1) ◽  
Author(s):  
Liang Xu ◽  
Zhigang Wang ◽  
Jian Chen ◽  
Songyi Chen ◽  
Wenge Yang ◽  
...  

AbstractThe fundamental relationships between the structure and properties of liquids are far from being well understood. For instance, the structural origins of many liquid anomalies still remain unclear, but liquid-liquid transitions (LLT) are believed to hold a key. However, experimental demonstrations of LLTs have been rather challenging. Here, we report experimental and theoretical evidence of a second-order-like LLT in molten tin, one which favors a percolating covalent bond network at high temperatures. The observed structural transition originates from the fluctuating metallic/covalent behavior of atomic bonding, and consequently a new paradigm of liquid structure emerges. The liquid structure, described in the form of a folded network, bridges two well-established structural models for disordered systems, i.e., the random packing of hard-spheres and a continuous random network, offering a large structural midground for liquids and glasses. Our findings provide an unparalleled physical picture of the atomic arrangement for a plethora of liquids, shedding light on the thermodynamic and dynamic anomalies of liquids but also entailing far-reaching implications for studying liquid polyamorphism and dynamical transitions in liquids.


2022 ◽  
Vol 120 (2) ◽  
pp. 023702
Author(s):  
Junru Hu ◽  
Hiroyasu Yamahara ◽  
Zhiqiang Liao ◽  
Yasuo Yano ◽  
Hitoshi Tabata

2021 ◽  
Author(s):  
Aashish Bhatt ◽  
Aritra Mukhopadhyaya ◽  
Md. Ehesan Ali

The modulation of electron density at the Pyridoxal 5-phosphate (PLP) catalytic center, due to charge transfer across the α-Helix-PLP interface, is the determining factor for the enzymatic activities in the human Cystathionine β-Synthase (hCBS) enzyme. Applying density-based first-principle calculations in conjunction with the real space density analysis, we investigated the charge density delocalization across the entire Heme-α-Helix-PLP electron communication channels. The hydrogen bonds at the interfaces, i.e. Heme-α-Helix and α-Helix-PLP interfaces, are found to play the pivotal role in bi-directional electron transfer towards the α-Helix. Moreover, the internal hydrogen bonds of α-Helix that are crucial for its secondary structure also actively participate in the electron redistribution through the structured hydrogen bond network. α-Helix is found to accumulate the electron density at the ground state from both the cofactors and behaves as an electron reservoir for catalytic reaction at the electrophilic center of PLP.


2021 ◽  
Vol 55 (9-10) ◽  
pp. 1109-1117
Author(s):  
AKBAR HANIF DAWAM ABDULLAH ◽  
◽  
BONITA FIRDIANA ◽  
ROSSY CHOERUN NISSA ◽  
RAHMAT SATOTO ◽  
...  

Starch–carboxymethyl cellulose (CMC) bioplastics have limited mechanical properties. Carrageenan from seaweed is a potential reinforcement material for improving the mechanical properties of bioplastics. This study aimed to determine the effect of Kappa (κ)-carrageenan on the mechanical and thermal properties and biodegradability of starch–CMC bioplastics. In this study, carrageenan at concentrations of 0%, 10%, 15%, 20%, 25% and 30% was used. The melt-mixing process was conducted at 130 °C for 4 min, using a mixer and then hot-pressing (30 kgf/cm2) at 150 °C for 5 min. The results indicated that the higher κ-carrageenan concentration increased the strength of bioplastics up to 15.7 MPa. The fracture analysis via scanning electron microscopy–energy-dispersive X-ray spectroscopy indicated the distribution of sulfur (S) elements that described the dispersion of κ-carrageenan. The Fourier transform infrared spectroscopy spectra revealed that the interaction between the starch–CMC matrix and κ-carrageenan formed a tight hydrogen bond network. The lowest mass reduction observed by thermogravimetric analysis occurred in bioplastics with 25% carrageenan, decreasing by 48% compared with bioplastics without κ-carrageenan. The addition of κ-carrageenan was identified as not affecting the biodegradability of the bioplastics.


2021 ◽  
Author(s):  
Qichen Wang ◽  
Qingguo Feng ◽  
Shuaihao Tang ◽  
Yongpeng Lei ◽  
Liang Xu ◽  
...  

Abstract Quasi-solid-state Zn-air batteries (ZABs) have shown extraordinary promise for electrochemical energy storage, but are usually limited to relatively low-rate ability (< 10 mA cm−2), which caused by the sluggish O2 electrocatalysis and unstable electrochemical interface. Here we present an ultrahigh-rate and robust quasi-solid-state ZABs integrated with the atomic Co-N4 sites anchored on wrinkled nitrogen-doped graphene (Co SA-NDGs) cathode and the modulated H-bond network of polyacrylamide (PAM) organohydrogel electrolyte with. The quasi-solid-state ZABs exhibit the highest cycling rate of 100 mA cm−2 over 50 h at room temperature, which is nearly an order of magnitude higher than results reported previously. Meanwhile, the exceptional cycling stability more than 300 h (0.5 mA cm−2) with high-capacity retention at -60 oC and all-temperature adaptability (-60 to 60°C) are also demonstrated. The integral design towards high performance Zn-air batteries using atomic site catalyst and electrolyte with good interface stability broaden the scope of application.


2021 ◽  
pp. 122871
Author(s):  
Tsuyoshi A. Kohlgruber ◽  
Samuel N. Perry ◽  
Ginger E. Sigmon ◽  
Allen G. Oliver ◽  
Peter C. Burns

Author(s):  
Liyuan Li ◽  
Tao Li ◽  
Yifan Sha ◽  
Chi Zhang ◽  
Baozeng Ren ◽  
...  
Keyword(s):  

Author(s):  
Jonathan Richard Church ◽  
Jógvan Magnus Haugaard Olsen ◽  
Igor Schapiro

Bistable rhodopsins have two stable forms which can be interconverted by light. Due to their ability to act as photoswitches, these proteins are considered as ideal candidates for applica-tions such as optogenetics. In this work we analyze a recently crystalized bistable rhodopsin, namely the jumping spider rhodopsin-1 (JSR1). This rhodopsin exhibits identical absorption maxima for the parent and the photoproduct form, which impedes its broad application. We have performed hybrid QM/MM simulations to study three isomers of the retinal chromo-phore: the 9-cis, 11-cis and all-trans configurations. The main aim was to gain insight into the specific interactions of each isomer and their impact on the absorption maximum in JSR1. The absorption spectra were computed using sampled snapshots from a QM/MM molecular dy-namics trajectory and compared to experimental counterparts. The chromophore-protein in-teractions were analyzed by visualizing the electrostatic potential of the protein and projecting it onto chromophore. It was found that the distance between a nearby tyrosine (Y126) residue plays a larger role in the predicted absorption maximum than the primary counterion (E194). Geometric differences between the isomers were also noted including a structural change in the polyene chain of the chromophore as well as changes in the nearby hydrogen bond network.


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