The role of the DNA-binding One Zinc Finger (DOF) transcription factor family in plants

Plant Science ◽  
2013 ◽  
Vol 209 ◽  
pp. 32-45 ◽  
Author(s):  
Mélanie Noguero ◽  
Rana Muhammad Atif ◽  
Sergio Ochatt ◽  
Richard D. Thompson
2018 ◽  
Vol 14 (4) ◽  
pp. 99-111
Author(s):  
Vinícius Garcia ◽  
Alessandra Ferreira Ribas ◽  
Luiz Gonzaga Esteves Vieira ◽  
Tiago Benedito dos Santos

A família Dof(DNA-binding with One Finger) é um grupo de fatores de transcrição que desempenham papéis importantes no crescimento, desenvolvimento e na resposta das plantas aos estresses bióticos e abióticos. Os genes Dofforam identificados e caracterizados em várias espécies de plantas;entretanto até o presente momento não há informações sobre esses genes em café. No presente estudo foram identificados 24 membros da família Dofno genoma de C. canephoradepositados no banco de dados Coffee Genome Hub. Análises sistemáticas de bioinformática foram realizadas para caracterizar os genes DofemC. canephora, incluindo a análise desequênciasgenômicas, domínios proteicos conservados, localizações subcelulares, relações filogenéticas e perfis de expressão gênica em diferentes tecidos. Os resultados obtidos fornecem uma melhor compreensãosobre a família dos genes CcDofpermitindo projetar experimentos futuros para caracterização molecular dessesgenes no cafeeiro.


1998 ◽  
Vol 18 (11) ◽  
pp. 6447-6456 ◽  
Author(s):  
Robert Y. L. Tsai ◽  
Randall R. Reed

ABSTRACT Roaz, a rat C2H2 zinc finger protein, plays a role in the regulation of olfactory neuronal differentiation through its interaction with the Olf-1/EBF transcription factor family. An additional role for the Roaz/Olf-1/EBF heterodimeric protein is suggested by its ability to regulate gene activation at a distinct promoter lacking Olf-1/EBF-binding sites. Using an in vitro binding-site selection assay (Selex), we demonstrate that Roaz protein binds to novel inverted perfect or imperfect repeats of GCACCC separated by 2 bp. We show that Roaz is capable of binding to a canonical consensus recognition sequence with high affinity (Kd = 3 nM). Analysis of the structural requirement for protein dimerization and DNA binding by Roaz reveals the role of specific zinc finger motifs in the Roaz protein for homodimerization and heterodimerization with the Olf-1/EBF transcription factor. The DNA-binding domain of Roaz is mapped to the N-terminal 277 amino acids, containing the first seven zinc finger motifs, which confers weak monomeric binding to a single half site and a stronger dimeric binding to the inverted repeat in a binding-site-dependent manner. Full-length protein can form dimers on both the inverted repeat and direct repeat but not on a single half site. These findings support the role of the TFIIIA-type Zn fingers in both protein-protein interaction and protein-DNA interaction and suggest distinct functions for specific motifs in proteins with a large number of zinc finger structures.


2004 ◽  
Vol 166 (6) ◽  
pp. 765-768 ◽  
Author(s):  
Said Hashemolhosseini ◽  
Michael Wegner

GCM proteins constitute a small transcription factor family with a DNA-binding domain exhibiting a novel fold composed of two subdomains rigidly held together by coordination of one of two structural zinc cations. In all known cases, GCM proteins exert the role of master regulators: the prototypical family member determines gliogenesis in Drosophila melanogaster, whereas mammalian GCM proteins orchestrate divergent aspects of development and physiology in placenta, kidney, thymus, and parathyroid gland. Recent data point to an involvement of GCM proteins in different pathological contexts, such as preeclampsia, hyper- or hypoparathyroidism, and parathyroid gland tumors.


2011 ◽  
Vol 30 (18) ◽  
pp. 3812-3822 ◽  
Author(s):  
Robert Blanvillain ◽  
Spencer Wei ◽  
Pengcheng Wei ◽  
Jong Heon Kim ◽  
David W Ow

2020 ◽  
Vol 21 (24) ◽  
pp. 9574
Author(s):  
María José Rodríguez Colman ◽  
Joaquim Ros ◽  
Elisa Cabiscol

Hcm1 is a member of the forkhead transcription factor family involved in segregation, spindle pole dynamics, and budding in Saccharomyces cerevisiae. Our group described the role of Hcm1 in mitochondrial biogenesis and stress resistance, and in the cellular adaptation to mitochondrial respiratory metabolism when nutrients decrease. Regulation of Hcm1 activity occurs at the protein level, subcellular localization, and transcriptional activity. Here we report that the amount of protein increased in the G1/S transition phase when the factor accumulated in the nucleus. In the G2/M phases, the Hcm1 amount decreased, and it was translocated outside the nucleus with a network-like localization. Preparation of highly purified mitochondria by a sucrose gradient density demonstrated that Hcm1 colocalized with mitochondrial markers, inducing expression of COX1, a mitochondrial encoded subunit of cytochrome oxidase, in the G2/M phases. Taken together, these results show a new localization of Hcm1 and suggest that it acts as a mitochondrial transcription factor regulating the metabolism of this organelle.


1999 ◽  
Vol 19 (12) ◽  
pp. 8281-8291 ◽  
Author(s):  
Yoshio Fujitani ◽  
Yoshitaka Kajimoto ◽  
Tetsuyuki Yasuda ◽  
Taka-Aki Matsuoka ◽  
Hideaki Kaneto ◽  
...  

ABSTRACT Pax4 is a paired-domain (PD)-containing transcription factor which plays a crucial role in pancreatic β/δ-cell development. In this study, we characterized the DNA-binding and transactivation properties of mouse Pax4. Repetitive rounds of PCR-based selection led to identification of the optimal DNA-binding sequences for the PD of Pax4. In agreement with the conservation of the optimal binding sequences among the Pax family transcription factors, Pax4 could bind to the potential binding sites for Pax6, another member of the Pax family also involved in endocrine pancreas development. The overexpression of Pax4 in HIT-T15 cells dose dependently inhibited the basal transcriptional activity as well as Pax6-induced activity. Detailed domain mapping analyses using GAL4-Pax4 chimeras revealed that the C-terminal region of Pax4 contains both activation and repression domains. The activation domain was active in the embryonic kidney-derived 293/293T cells and embryonal carcinoma-derived F9 cells, containing adenoviral E1A protein or E1A-like activity, respectively but was inactive or very weakly active in other cells including those of pancreatic β- and α-cell origin. Indeed, the exogenous overexpression of type 13S E1A in heterologous cell types could convert the activation domain to an active one. On the other hand, the repression domain was active regardless of the cell type. When the repression domain was linked to the transactivation domain of a heterologous transcription factor, PDX-1, it could completely abolish the transactivation potential of PDX-1. These observations suggest a primary role of Pax4 as a transcriptional repressor whose function may involve the competitive inhibition of Pax6 function. The identification of the E1A-responsive transactivation domain, however, indicates that the function of Pax4 is subject to posttranslational regulation, providing further support for the complexity of mechanisms that regulate pancreas development.


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