Detection of citrus black spot symptoms using spectral reflectance

2021 ◽  
Vol 180 ◽  
pp. 111627
Author(s):  
Chuanqi Xie ◽  
Won Suk Lee
2016 ◽  
Vol 26 (3) ◽  
pp. 254-260 ◽  
Author(s):  
Alireza Pourreza ◽  
Won Suk Lee ◽  
Mark A. Ritenour ◽  
Pamela Roberts

Citrus black spot (CBS) is a fungal disease caused by Phyllosticta citricarpa (synonym Guignardia citricarpa). CBS causes fruit lesions and significant yield loss in all citrus (Citrus) species. The most distinguishing CBS symptom is called hard spot, which is a circular lesion with gray tissue at the center surrounded by a black margin. The spectral characteristic of CBS lesions was investigated and compared with the spectral signature of healthy fruit tissue to determine the best distinguishing wave band. Healthy and CBS-affected samples presented similar reflectance below 500 nm and above 900 nm. However, healthy samples reflected more light between 500 and 900 nm, especially within the visible band. Also, spectral reflectance of the same symptomatic lesion was acquired six times over a 2-month period to determine the variation of symptom’s spectral signatures over time after being harvested. A two-sample t test was employed to compare each pair of consecutive repetitions. The results showed that the spectral signature of the CBS lesion did not change significantly over 2 months. The wavelengths between 587 and 589 nm were identified as the distinguishing band to develop a monochrome vision–based sensor for CBS diagnosis. A support vector machine (SVM) classifier was trained using the spectral reflectance data at the selected bands to identify CBS-affected samples in each repetition. The overall CBS detection accuracies varied between 93.3% and 94.6%.


2002 ◽  
Vol 92 (5) ◽  
pp. 464-477 ◽  
Author(s):  
R. P. Baayen ◽  
P. J. M. Bonants ◽  
G. Verkley ◽  
G. C. Carroll ◽  
H. A. van der Aa ◽  
...  

The population structure of Guignardia citricarpa sensu lato (anamorph: Phyllosticta citricarpa), a fungus of which strains pathogenic to citrus are subject to phytosanitary legislation in the European Union and the United States, was investigated. Internal transcribed spacer sequences revealed two phylogenetically distinct groups in G. citricarpa. This distinction was supported by amplified fragment length polymorphism analysis that also supported the exclusion of two isolates that had apparently been misclassified as G. citricarpa. On cherry decoction agar, but not on other media, growth rates of group I isolates were lower than those of group II isolates. Conidial dimensions were similar, but group I isolates formed conidia with barely visible mucoid sheaths, whereas those of group II formed conidia with thick sheaths. Cultures of isolates belonging to group I produced rare infertile perithecia, whereas fertile perithecia were formed by most isolates of group II. Colonies of isolates belonging to group I were less dark than those of group II, with a wider translucent outer zone and a lobate rather than entire margin. On oatmeal agar, exclusively group I isolates formed a yellow pigment. Group I harbored strains from citrus fruits with classical black spot lesions (1 to 10 mm in diameter) usually containing pycnidia. Group II harbored endophytic strains from a wide range of host species, as well as strains from symptomless citrus fruits or fruits with minute spots (<2-mm diameter) without pycnidia. These observations support the historic distinction between slowly growing pathogenic isolates and morphologically similar fast-growing, nonpathogenic isolates of G. citricarpa. The latter proved to belong to G. mangiferae (P. capitalensis), a ubiquitous endophyte of woody plants with numerous probable synonyms including G. endophyllicola, G. psidii, P. anacardiacearum, and P. theacearum. G. mangiferae occurs in the European Union and the United States on many host species including citrus, and does not cause symptoms of citrus black spot, justifying its exclusion from quarantine measures.


2021 ◽  
Author(s):  
Franklin Jackson Machado ◽  
Fabrício Eustáquio Lanza ◽  
Marcela Olivetti Ferretti ◽  
Régis Oliveira Fialho ◽  
Franklin Behlau ◽  
...  

2019 ◽  
Vol 109 (4) ◽  
pp. 650-658 ◽  
Author(s):  
Nan-Yi Wang ◽  
Megan M. Dewdney

Citrus black spot, caused by Phyllosticta citricarpa, has been identified in Florida since 2010 and can reduce fruit yield and marketability. The conditions required for conidial germination have been poorly understood for P. citricarpa, limiting further biological studies. In this study, the effects of citrus juices, concentration, pH, various carbon and nitrogen sources, and environmental conditions were evaluated in vitro. All tested juices, especially ‘Valencia’ (>85%, P < 0.05), favored germination and appressorium formation, whereas sterile water rarely stimulated germination (<1%). The ‘Valencia’ juice effect was concentration and pH dependent, and the maximum rate was reached in 1.5% juice with pH of 3.4. Most carbon, nitrogen, or complex sources did not favor germination or appressorium formation, with the exception of potato dextrose broth. An incubation period of 18 to 24 h at 24°C was required for peak germination and appressorium formation. The further analysis of critical juice components using synthetic citrus juice revealed that sugars, salts, citric acid, and thiamine were most important for germination and appressorium formation (>80%, P > 0.05). These results provide a better understanding of fungal biology of P. citricarpa and a robust and convenient system for further applications such as screening for efficacious fungicides.


Plant Disease ◽  
2012 ◽  
Vol 96 (8) ◽  
pp. 1225-1225 ◽  
Author(s):  
T. S. Schubert ◽  
M. M. Dewdney ◽  
N. A. Peres ◽  
M. E. Palm ◽  
A. Jeyaprakash ◽  
...  

In March 2010, citrus black spot symptoms were observed on sweet orange trees in a grove near Immokalee, FL. Symptoms observed on fruit included hard spot, cracked spot, and early virulent spot. Hard spot lesions were up to 5 mm, depressed with a chocolate margin and a necrotic, tan center, often with black pycnidia (140 to 200 μm) present. Cracked spot lesions were large (15 mm), dark brown, with diffuse margins and raised cracks. In some cases, hard spots formed in the center of lesions. Early virulent spot lesions were small (up to 7 mm long), bright red, irregular, indented, and often with many pycnidia. In addition, small (2 to 3 mm), elliptical, reddish brown leaf lesions with depressed tan centers were observed on some trees with symptomatic fruit. Chlorotic halos appeared as they aged. Most leaves had single lesions, occasionally up to four per leaf. Tissue pieces from hard spots and early virulent spots were placed aseptically on potato dextrose agar (PDA), oatmeal agar, or carrot agar and incubated with 12 h of light and dark at 24°C. Cultures that grew colonies within a week were discarded. Fourteen single-spore cultures were obtained from the isolates that grew slower than the Guignardia mangiferae reference cultures, although pycnidia formed more rapidly in the G. mangiferae cultures (1). No sexual structures were observed. Cultures on half-PDA were black and cordlike with irregular margins with numerous pycnidia, often bearing white cirrhi after 14 days. Conidia (7.1 to 7.8 × 10.3 to 11.8 μm) were hyaline, aseptate, multiguttulate, ovoid with a flattened base surrounded by a hyaline matrix (0.4 to 0.6 μm) and a hyaline appendage on the rounded apex, corresponding to published descriptions of G. citricarpa (anomorph Phyllosticta citricarpa) (1). A yellow pigment was seen in oatmeal agar surrounding G. citricarpa, but not G. mangiferae colonies as previously reported (1,2). DNA was extracted from lesions and cultures and amplified with species-specific primers (2). DNA was also extracted from G. mangiferae and healthy citrus fruit. The G. citricarpa-specific primers produced a 300-bp band from fruit lesions and pure cultures. G. mangiferae-specific primers produced 290-bp bands with DNA from G. mangiferae cultures. The internally transcribed spacer (ITS) of the rRNA gene, translation-elongation factor (TEF), and actin gene regions were sequenced from G. citricarpa isolates and deposited in GenBank. These sequences had 100% homology with G. citricarpa ITS sequences from South Africa and Brazil, 100% homology with TEF, and 99% homology with actin of a Brazilian isolate. Pathogenicity tests with G. citricarpa were not done because the organism infects immature fruit and has an incubation period of at least 6 months (3). In addition, quarantine restrictions limit work with the organism outside a contained facility. To our knowledge, this is the first report of black spot in North America. The initial infested area was ~57 km2. The disease is of great importance to the Florida citrus industry because it causes serious blemishes and significant yield reduction, especially on the most commonly grown ‘Valencia’ sweet orange. Also, the presence of the disease in Florida may affect market access because G. citricarpa is considered a quarantine pathogen by the United States and internationally. References: (1) R. P. Baayen et al. Phytopathology 92:464, 2002. (2) N. A. Peres et al. Plant Dis. 91:525, 2007 (3) R. F. Reis et al. Fitopath Bras. 31:29, 2006.


Plant Disease ◽  
2006 ◽  
Vol 90 (1) ◽  
pp. 97-101 ◽  
Author(s):  
L. Meyer ◽  
G. M. Sanders ◽  
R. Jacobs ◽  
L. Korsten

If South African citrus exporters wish to retain their competitive edge in the European market and access new markets such as the United States of America, it is of quarantine importance to distinguish between the citrus black spot pathogen, Guignardia citricarpa, and the harmless endophyte, G. mangiferae. The endophyte is not a sanitary or phytosanitary concern. This paper describes the design of species-specific primers that are able to detect and distinguish between these two Guignardia species. Application of the primer set CITRIC1 and CAMEL2 in conjunction with the ITS4 primer yielded polymerase chain reaction (PCR) amplicons of approximately 580 bp and 430 bp for G. citricarpa and G. mangiferae, respectively. Results obtained with these primers are in accordance with sequence data, and repeated tests verified accuracy and sensitivity. A BLAST search revealed no matches other than G. citricarpa and G. mangiferae, and no positive PCR results were obtained with Colletotrichum gloeosporioides, which is the most common contaminant in black spot lesions. We are, therefore, able to distinguish G. citricarpa and G. mangiferae unequivocally using a PCR-based method. This method was further improved to directly isolate DNA from fruit lesions by means of the DNeasy Plant Mini Kit (Qiagen). This eliminates the prior need for culturing the slow-growing organism, thereby shortening the time required to one day to test for and verify the presence or absence of the pathogenic G. citricarpa in export consignments.


Plant Disease ◽  
2018 ◽  
Vol 102 (7) ◽  
pp. 1386-1393 ◽  
Author(s):  
Nga T. Tran ◽  
Andrew K. Miles ◽  
Malcolm W. Smith ◽  
Ralf G. Dietzgen ◽  
André Drenth

Citrus black spot, caused by Phyllosticta citricarpa, is one of the most important fungal diseases in many citrus-growing regions with hot and humid summers. Ascospores and conidia are known to contribute to epidemic development of the disease. However, pathogenicity testing has never been done for pure ascospores produced from fully characterized P. citricarpa isolates, due to the inability to induce the sexual state in vitro. Recently, an in vitro mating technique was developed to readily produce pure P. citricarpa ascospores for use in host inoculation studies. To test the pathogenicity of P. citricarpa ascospores, we inoculated Troyer citrange leaves and Murcott tangor fruit with ascospores produced in vitro from characterized P. citricarpa isolates. Typical symptoms of citrus black spot occurred. Recovery of P. citricarpa isolates from symptomatic lesions and their characterization using genetic markers enabled us to identify recombinant genotypes among the isolates recovered from ascospore inoculations and, as such, fulfill Koch’s postulates for ascospores. We have also identified Troyer citrange seedlings as a potential model system for citrus black spot inoculation studies, because it allows typical symptoms of citrus black spot to be expressed with a much shorter latent period than on fruit. This will facilitate future studies of epidemiological aspects of P. citricarpa ascospores relative to conidia and improve our understanding of the citrus black spot pathosystem. The susceptibility of Troyer citrange seedlings will also facilitate experimenting with disease management methods, aimed at reducing the impact of citrus black spot.


2021 ◽  
Author(s):  
Geraldo José Silva Júnior ◽  
Mario Roberto Moraes ◽  
Rafaele Regina Moreira ◽  
Franklin Behlau

EDIS ◽  
2021 ◽  
Author(s):  
Megan M. Dewdney ◽  
Callie Walker ◽  
Pamela D. Roberts ◽  
Natalia A. Peres

Sections: regulatory considerations; growers, caretakers, harvesters, and haulers; processing and packing facilities and haulers, disposal of citrus debris; Interstate shipment of fruit; export shipment of fruit; regulatory remarks; and recommended chemical controls


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