scholarly journals Identifying novel factors associated with COVID-19 transmission and fatality using the machine learning approach

Author(s):  
Mengyuan Li ◽  
Zhilan Zhang ◽  
Wenxiu Cao ◽  
Yijing Liu ◽  
Beibei Du ◽  
...  
2021 ◽  
Vol 39 (15_suppl) ◽  
pp. 1567-1567
Author(s):  
Alison Stopeck ◽  
Celestia S. Higano ◽  
David H. Henry ◽  
Basia A. Bachmann ◽  
Marko Rehn ◽  
...  

1567 Background: The anti-RANKL monoclonal antibody denosumab has been shown to be superior to the bisphosphonate zoledronate for the prevention of skeletal-related events (SREs) in patients with incident bone metastases (BM) from solid tumors (ST). Clinical guidelines recommend the use of a bone-targeting agent for SRE prevention for ≥ 2 years. However, real-world treatment patterns in the U.S. suggest that the denosumab treatment duration is often < 1 year. Applying a machine learning approach, we sought to identify risk factors associated with SRE incidence following cessation of denosumab to help inform optimal clinical SRE prevention strategies. Methods: Using the Optum PanTher Electronic Health Record repository, patients diagnosed with incident BM from a primary ST between 1 Jan 2007 and 1 Sep 2019 were evaluated for inclusion in the study. Eligible patients had to receive ≥ 2 consecutive 120 mg denosumab doses on an every 4-week (± 14 days) schedule and have a minimum follow-up ≥ 1 year after the last denosumab dose or an SRE occurring between days 84 and 365 after denosumab cessation. Extreme gradient boosting was used to develop an SRE risk prediction model evaluated on a test dataset. Impact and relative importance of available medical, clinical, and treatment factors on SRE risk following denosumab cessation were extracted from the model using Shapley additive explanations (SHAP). Univariate analyses on risk factors with the highest importance from pooled and tumor-specific models were also conducted. Results: A total of 1,414 patients (breast, n = 563 [40%]; prostate, 421 [30%]; lung, 180 [13%]; other cancers, 250 [17%]) met inclusion criteria, with a median of 253 (min, 88; max, 2726) days of denosumab treatment; 490 (35%) experienced ≥ 1 SRE following denosumab cessation. With a meaningful model performance based on an area under the receiver operating characteristic (AUROC) score of 77%, SHAP identified several significant factors that predicted an increased SRE risk following denosumab cessation, including prior SREs, shorter denosumab treatment duration, and a higher number of clinic visits as the top-ranked factors (Table). Conclusions: A machine learning approach to SRE risk factor identification may help clinicians better assess the individualized patient’s need for denosumab treatment persistence and improve patient outcomes. Results from tumor-specific groups will be presented at the meeting.[Table: see text]


2020 ◽  
Author(s):  
Mohammad Asghari Jafarabadi ◽  
Zeynab Iraji ◽  
Roya Dolatkhah ◽  
Tohid Jafari Koshki

Abstract Background: Breast cancer (BC) was the fifth leading cause of death worldwide in 2015 and the second leading cause of death in Iran in 2012. This study aimed to model the factors associated with mortality in patients with BC utilizing the machine learning approach.Methods: We used data of patients with primary BC during 2007-2016 in Tabriz, Iran. The data were analyzed using decision tree (DT), boosted tree (BT), random forest (RF), k-nearest neighbors (KNN) and generalized additive model (GAM) with inverse probability of censoring weighting (IPCW) technique to assess the risk factors of mortality. The models were compared by using diagnostic accuracy measures.Results: Accuracy of the models ranged from 76.0 to 93.0%, with sensitivity of 82.5-98.8% and specificity of 72.2-99.4%. The GAM fit the data best with accuracy of 93.0% (95% CI: [90.5, 95.0]), sensitivity of 98.8% (95% CI: [96.9, 99.7]) and specificity of 84.3% (95% CI: [78.8, 88.9]) where non-linear effect of age (p-value = 0.006), grade (p-value = 0.024) and time to event (p-value < 0.001) on mortality were significant. Conclusion: The GAM seems to be an optimal model for classifying the mortality in patients with BC. Considering the time to event, age and grade, as the prognostic factors obtained by GAM, more accurate prevention planning may be designed.


2020 ◽  
Author(s):  
Mohammad Asghari Jafarabadi ◽  
Zaynab Iraji ◽  
Roya Dolatkhah ◽  
Tohid jafari koshki

Abstract Background: Breast cancer (BC) was the fifth leading cause of death worldwide in 2015 and the second leading cause of death in Iran in 2012. This study aimed to model the factors associated with mortality in patients with BC utilizing the machine learning approach.Methods: We used data of patients with primary BC during 2007-2016 in Tabriz, Iran. The data were analyzed using decision tree (DT), boosted tree (BT), random forest (RF), k-nearest neighbors (KNN) and generalized additive model (GAM) with inverse probability of censoring weighting (IPCW) technique to assess the risk factors of mortality. The models were compared by using diagnostic accuracy measures.Results: Accuracy of the models ranged from 76.0 to 93.0%, with sensitivity of 82.5-98.8% and specificity of 72.2-99.4%. The GAM fit the data best with accuracy of 93.0% (95% CI: [90.5, 95.0]), sensitivity of 98.8% (95% CI: [96.9, 99.7]) and specificity of 84.3% (95% CI: [78.8, 88.9]) where non-linear effect of age (p-value = 0.006), grade (p-value = 0.024) and time to event (p-value < 0.001) on mortality were significant. Conclusion: The GAM seems to be an optimal model for classifying the mortality in patients with BC. Considering the time to event, age and grade, as the prognostic factors obtained by GAM, more accurate prevention planning may be designed.


JAMA Surgery ◽  
2019 ◽  
Vol 154 (11) ◽  
pp. 1014 ◽  
Author(s):  
J. Madison Hyer ◽  
Aslam Ejaz ◽  
Diamantis I. Tsilimigras ◽  
Anghela Z. Paredes ◽  
Rittal Mehta ◽  
...  

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