scholarly journals Graphab: An application for modeling and managing ecological habitat networks

2021 ◽  
Vol 8 ◽  
pp. 100065
Author(s):  
Jean-Christophe Foltête ◽  
Gilles Vuidel ◽  
Paul Savary ◽  
Céline Clauzel ◽  
Yohan Sahraoui ◽  
...  
2020 ◽  
Vol 139 ◽  
pp. 139-152
Author(s):  
N Vázquez ◽  
A Frizzera ◽  
F Cremonte

A histological survey of the commercially edible mussels Mytilus platensis and M. chilensis from wild and cultivated populations along the coast of Patagonia, Argentina (42°00’ to 54°47’S), was carried out to determine their health status. Diagnostic results included 3 types of inflammatory responses (infiltrative, nodular, and encapsulation), disseminated neoplasia disease, 2 abnormal reproductive conditions (gonadal atresia and intersex), prokaryotic inclusions, protozoans, and metazoans. Pathogen prevalence and infection intensity among mussels of different sampling sites and between those of wild and cultivated populations were compared. Inflammatory responses were recorded in all mussels from all sites, while disseminated neoplasia only occurred in the most southern cultivated M. chilensis. Intracellular prokaryotic inclusions were broadly distributed in the mussels from both northern and southern Patagonian coasts. Ciliates showed the highest prevalence among wild mussels from the colder waters of Bahía Brown. Turbellaria were recorded at higher prevalence in cultured mussels (41.7%), and trematode metacercariae occurred exclusively in intertidal wild mussels. None of the parasites found appears to be a problem to the fishery or farming, although disseminated neoplasia should be monitored. In addition, we found that mytilid species coexisting with M. platensis (Aulacomya atra and Perumytilus purpuratus) at one location shared the same pathological conditions and parasites, which differed from those of M. platensis at a distant locality. These results suggest that pathological conditions and parasites were influenced more by ecological habitat factors than by the species of mussels present, based on similar parasite assemblages found among closely related mytilid hosts in the same geographical area.


Oecologia ◽  
2021 ◽  
Author(s):  
Peng He ◽  
Pierre-Olivier Montiglio ◽  
Marius Somveille ◽  
Mauricio Cantor ◽  
Damien R. Farine

AbstractBy shaping where individuals move, habitat configuration can fundamentally structure animal populations. Yet, we currently lack a framework for generating quantitative predictions about the role of habitat configuration in modulating population outcomes. To address this gap, we propose a modelling framework inspired by studies using networks to characterize habitat connectivity. We first define animal habitat networks, explain how they can integrate information about the different configurational features of animal habitats, and highlight the need for a bottom–up generative model that can depict realistic variations in habitat potential connectivity. Second, we describe a model for simulating animal habitat networks (available in the R package AnimalHabitatNetwork), and demonstrate its ability to generate alternative habitat configurations based on empirical data, which forms the basis for exploring the consequences of alternative habitat structures. Finally, we lay out three key research questions and demonstrate how our framework can address them. By simulating the spread of a pathogen within a population, we show how transmission properties can be impacted by both local potential connectivity and landscape-level characteristics of habitats. Our study highlights the importance of considering the underlying habitat configuration in studies linking social structure with population-level outcomes.


2017 ◽  
pp. 119
Author(s):  
Melvin J. Shemluck ◽  
Eduardo Estrada ◽  
Robert Nicholson ◽  
Susan W. Brobst

This paper represents a preliminary study of the botany, natural history and taxane chemistry of the Mexican yew, Taxus globosa Schltdl. Taxonomic history, morphological comparison to other North American species and ecological habitat are discussed. Chemical study involved leaf and twig material from forty-nine plants from three localities in Mexico. Levels of taxol, cephalomannine and baccatin III were determined by HPLC analysis. Intrapopulational variation was found to be very high while mean taxane levels for each of the three populations were very similar. The average percentage of taxol in leaves of T. globosa is higher than in all other species of Taxus (0.0121% dry wt.).


2020 ◽  
Vol 21 ◽  
pp. e00890
Author(s):  
Arjun Thapa ◽  
Yibo Hu ◽  
Prakash Chandra Aryal ◽  
Paras Bikram Singh ◽  
Karan Bahadur Shah ◽  
...  

2018 ◽  
Vol 10 (11) ◽  
pp. 4032 ◽  
Author(s):  
Kidoo Park ◽  
Kil Lee ◽  
Young-Oh Kim

Drought flow as the minimum flow rate required for restoration of the Mokgamcheon stream was calculated by the Storm Water Management Model (SWMM) V.5.0. The adequacy of drought flow to guarantee the minimum ecological environment was assessed using suitable low-flows not exceeding the maximum pollution concentration of the ecosystem calculated by Design FLOWs (DFLOW) V.4.1. Fish flows, which provide proper ecological habitat for fish, were calculated using Physical HABitat SIMulation (PHABSIM) V.1.5.2 to provide proper ecological habitat for target fishes such as Carassius auratus and Zacco platypus. The monthly expected instream flows were determined as the largest value between drought flow and fish flow. In most cases, instream flows were determined by drought flows exceeding fish flows that satisfy the condition of species habitat, but in the case of Carassius auratus, drought flows were less than fish flows in April, September, and October. Thus, structural measures for the supply of additional discharge were required. Instead, when natural environment-friendly instream structures, such as stepping stones were used, affordable ecological restoration that met the preferred conditions for discharge and depth of Carassius auratus was possible. The stepping stones were assessed using River2D V.0.95a to measure their effectiveness compared to other structural measures that would be costly and time-consuming to secure shortage of fish flow. Finally, the stability of the habitat was assessed through flood analysis; in case of a flood discharge of 5.2 m3/s obtained from time-series analysis, it was evaluated that the stability of habitats could be reasonable.


2020 ◽  
Author(s):  
Francesco Lami ◽  
Ignasi Bartomeus ◽  
Davide Nardi ◽  
Tatiane Beduschi ◽  
Francesco Boscutti ◽  
...  

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