Soil bacterial abundance and diversity better explained and predicted with spectro-transfer functions

2019 ◽  
Vol 129 ◽  
pp. 29-38 ◽  
Author(s):  
Yuanyuan Yang ◽  
Raphael A. Viscarra Rossel ◽  
Shuo Li ◽  
Andrew Bissett ◽  
Juhwan Lee ◽  
...  
2010 ◽  
Vol 24 (sup1) ◽  
pp. 469-473 ◽  
Author(s):  
A. Kenarova ◽  
G. Radeva ◽  
I. Danova ◽  
S. Boteva ◽  
I. Dimitrova

2017 ◽  
Vol 74 (3) ◽  
pp. 691-700 ◽  
Author(s):  
Erika S. Blay ◽  
Stacy G. Schwabedissen ◽  
Timothy S. Magnuson ◽  
Ken A. Aho ◽  
Peter P. Sheridan ◽  
...  

Viruses ◽  
2019 ◽  
Vol 11 (4) ◽  
pp. 347 ◽  
Author(s):  
Yuting Li ◽  
Hao Sun ◽  
Weichao Yang ◽  
Guanxiong Chen ◽  
Hui Xu

Viruses are ubiquitous in natural systems. By influencing bacterial abundance (BA) and community structure through lysis-lysogenic conversion, viruses are involved in various ecological processes. In agricultural management, nitrogen addition and irrigation should be considered as important factors that can modify soil viral dynamics but have been ignored. In our study, short-term dynamics of autochthonous soil viral and bacterial abundance and diversity after irrigation and urea application were examined in a long-term experimental paddy field. Urea addition delayed the emergence of peak viral abundance for three days, suggesting that viruses are sensitive to N addition. Under short-term eutrophic conditions through urea application, viruses undertake a lysogenic-biased strategy. Moreover, nitrogen-fixing bacteria were most likely specifically lysed in urea-treated soil, which suggests that soil viruses block N accumulation by killing nitrogen-fixing bacteria. To the best of our knowledge, this study is the first to investigate dynamic changes in autochthonous viruses in paddy fields.


PLoS ONE ◽  
2012 ◽  
Vol 7 (5) ◽  
pp. e37849 ◽  
Author(s):  
Krissi M. Hewitt ◽  
Charles P. Gerba ◽  
Sheri L. Maxwell ◽  
Scott T. Kelley

2011 ◽  
Vol 77 (15) ◽  
pp. 5438-5444 ◽  
Author(s):  
Moogega Cooper ◽  
Myron T. La Duc ◽  
Alexander Probst ◽  
Parag Vaishampayan ◽  
Christina Stam ◽  
...  

ABSTRACTA bacterial spore assay and a molecular DNA microarray method were compared for their ability to assess relative cleanliness in the context of bacterial abundance and diversity on spacecraft surfaces. Colony counts derived from the NASA standard spore assay were extremely low for spacecraft surfaces. However, the PhyloChip generation 3 (G3) DNA microarray resolved the genetic signatures of a highly diverse suite of microorganisms in the very same sample set. Samples completely devoid of cultivable spores were shown to harbor the DNA of more than 100 distinct microbial phylotypes. Furthermore, samples with higher numbers of cultivable spores did not necessarily give rise to a greater microbial diversity upon analysis with the DNA microarray. The findings of this study clearly demonstrated that there is not a statistically significant correlation between the cultivable spore counts obtained from a sample and the degree of bacterial diversity present. Based on these results, it can be stated that validated state-of-the-art molecular techniques, such as DNA microarrays, can be utilized in parallel with classical culture-based methods to further describe the cleanliness of spacecraft surfaces.


2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Ana Novoa ◽  
Llewellyn C. Foxcroft ◽  
Jan-Hendrik Keet ◽  
Petr Pyšek ◽  
Johannes J. Le Roux

AbstractThe patchy distribution of trees typical of savannas often results in a discontinuous distribution of water, nutrient resources, and microbial communities in soil, commonly referred to as “islands of fertility”. We assessed how this phenomenon may affect the establishment and impact of invasive plants, using the invasion of Opuntia stricta in South Africa’s Kruger National Park as case study. We established uninvaded and O. stricta-invaded plots under the most common woody tree species in the study area (Vachellia nilotica subsp. kraussiana and Spirostachys africana) and in open patches with no tree cover. We then compared soil characteristics, diversity and composition of the soil bacterial communities, and germination performance of O. stricta and native trees between soils collected in each of the established plots. We found that the presence of native trees and invasive O. stricta increases soil water content and nutrients, and the abundance and diversity of bacterial communities, and alters soil bacterial composition. Moreover, the percentage and speed of germination of O. stricta were higher in soils conditioned by native trees compared to soils collected from open patches. Finally, while S. africana and V. nilotica trees appear to germinate equally well in invaded and uninvaded soils, O. stricta had lower and slower germination in invaded soils, suggesting the potential release of phytochemicals by O. stricta to avoid intraspecific competition. These results suggest that the presence of any tree or shrub in savanna ecosystems, regardless of origin (i.e. native or alien), can create favourable conditions for the establishment and growth of other plants.


2016 ◽  
Vol 6 (1) ◽  
Author(s):  
Ya Qin ◽  
Jie Hou ◽  
Ming Deng ◽  
Quansheng Liu ◽  
Chongwei Wu ◽  
...  

2009 ◽  
Vol 76 (2) ◽  
pp. 120-127 ◽  
Author(s):  
Nadia Khammar ◽  
Gaëtan Martin ◽  
Katia Ferro ◽  
Daniel Job ◽  
Michel Aragno ◽  
...  

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