The influence of surface reconstruction on the collective motion of adsorbed atoms

1998 ◽  
Vol 416 (1-2) ◽  
pp. 152-166 ◽  
Author(s):  
F. Nieto ◽  
C. Uebing ◽  
V. Pereyra
1992 ◽  
Vol 280 ◽  
Author(s):  
Michael I. Haftel ◽  
Mervine Rosen

ABSTRACTUsing embedded atom potentials fit to both bulk and surface properties, we explore the submonolayer vapor deposition of Au and Pt onto reconstructed (100) surfaces with the MD code DAMSEL. The surface geometries are determined by computational annealing over .6 ns. Surface reconstruction has a strong influence on the effects of adatoms. In Au and Pt the deposited atoms are absorbed into the surface and surface structures form by atomic replacement sequences and collective motion over the surface and substrate. On Au the reconstructed corrugated surface evolves into one characterized by two-dimensional mounds as coverage is increased. On reconstructed Pt, which exhibits alternately quasihexagonal and bulk-like regions, adatoms initially form strings above the bulk-like regions parallel to the (110] corrugation rows. At about .5 monolayer coverage the quasihexagonal structure of the top substrate layer transitions to a bulk-like structure in both Au and Pt


2019 ◽  
Vol 133 (2) ◽  
pp. 143-155 ◽  
Author(s):  
Vicenç Quera ◽  
Elisabet Gimeno ◽  
Francesc S. Beltran ◽  
Ruth Dolado

2004 ◽  
Vol 114 ◽  
pp. 277-281 ◽  
Author(s):  
J. Wosnitza ◽  
J. Hagel ◽  
O. Stockert ◽  
C. Pfleiderer ◽  
J. A. Schlueter ◽  
...  

1978 ◽  
Vol 39 (C6) ◽  
pp. C6-488-C6-489 ◽  
Author(s):  
C. J. Pethick ◽  
H. Smith
Keyword(s):  

2020 ◽  
Author(s):  
Jiawei Peng ◽  
Yu Xie ◽  
Deping Hu ◽  
Zhenggang Lan

The system-plus-bath model is an important tool to understand nonadiabatic dynamics for large molecular systems. The understanding of the collective motion of a huge number of bath modes is essential to reveal their key roles in the overall dynamics. We apply the principal component analysis (PCA) to investigate the bath motion based on the massive data generated from the MM-SQC (symmetrical quasi-classical dynamics method based on the Meyer-Miller mapping Hamiltonian) nonadiabatic dynamics of the excited-state energy transfer dynamics of Frenkel-exciton model. The PCA method clearly clarifies that two types of bath modes, which either display the strong vibronic couplings or have the frequencies close to electronic transition, are very important to the nonadiabatic dynamics. These observations are fully consistent with the physical insights. This conclusion is obtained purely based on the PCA understanding of the trajectory data, without the large involvement of pre-defined physical knowledge. The results show that the PCA approach, one of the simplest unsupervised machine learning methods, is very powerful to analyze the complicated nonadiabatic dynamics in condensed phase involving many degrees of freedom.


2020 ◽  
Author(s):  
Jian Li ◽  
◽  
Bin Dai ◽  
Christopher M. Jones ◽  
Etienne M. Samson ◽  
...  

2020 ◽  
pp. 1-5
Author(s):  
Usman Khan ◽  
Usman Khan ◽  
AmanUllah Yasin ◽  
Imran Shafi ◽  
Muhammad Abid

In this work GPU implementation of classic 3D visualization algorithms namely Marching Cubes and Raycasting has been carried for cervical vertebra using VTK libraries. A proposed framework has been introduced for efficient and duly calibrated 3D reconstruction using Dicom Affine transform and Python Mayavi framework to address the limitation of benchmark visualization techniques i.e. lack of calibration, surface reconstruction artifacts and latency.


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