Neural network-based sperm whale click classification

2007 ◽  
Vol 87 (1) ◽  
pp. 35-38 ◽  
Author(s):  
M. van der Schaar ◽  
E. Delory ◽  
A. Català ◽  
M. André
Keyword(s):  
Neural Network ◽  
Wavelet Packet ◽  
Radial Basis Function Network ◽  
Sperm Whale ◽  
Data Sets ◽  
Sperm Whales ◽  
Training Set ◽  
Data Set ◽  
Validation Set ◽  
Function Network

Recordings of a group of foraging sperm whales usually result in a mixture of clicks from different animals. To analyse the click sequences of individual whales these clicks need to be separated, and for this an automatic classifier would be preferred. Here we study the use of a radial basis function network to perform the separation. The neural network's ability to discriminate between different whales was tested with six data sets of individually diving males. The data consisted of five shorter click trains and one complete dive which was especially important to evaluate the capacity of the network to generalize. The network was trained with characteristics extracted from the six click series with the help of a wavelet packet-based local discriminant basis. The selected features were separated in a training set containing 50 clicks of each data set and a validation set with the remaining clicks. After the network was trained it could correctly classify around 90% of the short click series, while for the entire dive this percentage was around 78%.

scholarly journals Rapid Point-Of-Care Breath Test Predicts Breast Cancer And Abnormal Mammograms in Symptomatic Women

2020 ◽  
Author(s):  
Michael Phillips ◽  
Therese B Bevers ◽  
Linda Hovanessian Larsen ◽  
Nadine Pappas ◽  
Sonali Pathak
Keyword(s):  
Breast Cancer ◽  
Point Of Care ◽  
Nipple Discharge ◽  
Monte Carlo Analysis ◽  
Invasive Cancer ◽  
Data Sets ◽  
Training Set ◽  
Data Set ◽  
Point Of Care Test ◽  
Validation Set

ABSTRACTBackgroundPrevious studies have reported volatile organic compounds (VOCs) in the breath as biomarkers of breast cancer. These biomarkers may be derived from cancer-associated fibroblasts, in which oxidative stress degrades polyunsaturated fatty acids to volatile alkanes and methylated alkane derivatives that are excreted in the breath. We evaluated a rapid point-of-care test for breath VOC biomarkers as predictors of breast cancer and abnormal mammograms.MethodsWe studied 593 women aged ≥ 18 yr referred to three sites for mammography for a symptomatic breast-related concern (e.g. breast mass, nipple discharge). A rapid point-of-care breath testing system collected and concentrated alveolar breath VOCs on a sorbent trap and analyzed them with gas chromatography and surface acoustic wave detection in < 6 min. Breath VOC chromatograms were randomly assigned to a training set or to a validation set. Monte Carlo analysis identified significant breath VOC biomarkers of breast cancer and abnormal mammograms in the training set, and these biomarkers were incorporated into a multivariate algorithm to predict disease in the validation set.ResultsPrediction of breast cancer: 50 women had biopsy-proven breast cancer (invasive cancer 41, ductal non-invasive cancer 9) Unsplit data set: Breath VOCs identified breast cancer with 83% accuracy (area under curve of receiver operating characteristic), 82% sensitivity and 77.1% specificity. Split data sets: Training set breath VOCs identified breast cancer with 80.3% accuracy, 84% sensitivity and 74.3% specificity. Corresponding values in the validation set were 68%% accuracy, 72.4% sensitivity and 61.5% specificity.Prediction of BIRADS 4 and 5 mammograms (versus BIRADS 1, 2 and 3): Unsplit data set: Breath VOCs identified abnormal mammograms with 76.2% accuracy. Split data sets: Breath VOCs identified abnormal mammograms with 74.2% accuracy, 73.3% sensitivity and 60% specificity. Corresponding values in the validation set were 60.5% accuracy, 64.2% sensitivity and 51% specificity.ConclusionsA rapid point-of-care test for breath VOC biomarkers accurately predicted risk of breast cancer and abnormal mammograms in women with breast-related symptoms.

Constructive Neural Networks and Their Application to Ship Multidisciplinary Design Optimization

2007 ◽  
Vol 51 (04) ◽  
pp. 297-312
Author(s):  
Eric Besnard ◽  
Adeline Schmitz ◽  
Hamid Hefazi ◽  
Rahul Shinde
Keyword(s):  
Neural Network ◽  
Data Sets ◽  
Mathematical Function ◽  
Training Set ◽  
The Neural Network ◽  
Development Cycle ◽  
Cascade Correlation ◽  
Small Set ◽  
Validation Set ◽  
The Cost

This paper presents a neural network-based response surface method for reducing the cost of computer-intensive optimizations for applications in ship design. In the approach, complex or costly analyses are replaced by a neural network, which is used to instantaneously estimate the value of the function(s) of interest. The cost of the optimization is shifted to the generation of (smaller) data sets used for training the network. The focus of the paper is on the use and analysis of constructive networks, as opposed to networks of fixed size, for treating problems with a large number of variables, say around 30. The advantages offered by constructive networks are emphasized, leading to the selection and discussion of the cascade correlation algorithm. This topology allows for efficient neural network determination when dealing with function representation over large design spaces without requiring prior experience from the user. During training, the network grows until the error on a small set (validation set), different from that used in the training itself (training set), starts increasing. The method is validated for a mathematical function for dimensions ranging from 5 to 30, and the importance of analyzing the error on a set other than the training set is emphasized. The approach is then applied to the automated computational fluid dynamics-based shape optimization of a fast ship configuration known as the twin H-body. The classical approach yields a design improvement of 26%, whereas the neural network-based method allows reaching a 34% improvement at one fifth of the cost of the former. Based on the analysis of the results, areas for future improvements and research are outlined. The results demonstrate the potential of the method in saving valuable development cycle time and increasing the performance of future ship designs.

A Comparison Study of Mahalanobis-Taguchi System and Neural Network for Multivariate Pattern Recognition

2005 ◽  
Author(s):  
Jungeui Hong ◽  
Elizabeth A. Cudney ◽  
Genichi Taguchi ◽  
Rajesh Jugulum ◽  
Kioumars Paryani ◽  
...  
Keyword(s):  
Neural Network ◽  
Small Data ◽  
Data Sets ◽  
Comparison Study ◽  
Data Set ◽  
Set Size ◽  
Breast Cancer Study ◽  
Discriminant Ability ◽  
Small Data Sets ◽  
Multivariate Pattern

The Mahalanobis-Taguchi System is a diagnosis and predictive method for analyzing patterns in multivariate cases. The goal of this study is to compare the ability of the Mahalanobis-Taguchi System and a neural network to discriminate using small data sets. We examine the discriminant ability as a function of data set size using an application area where reliable data is publicly available. The study uses the Wisconsin Breast Cancer study with nine attributes and one class.

scholarly journals Application of Multi-Scale Fusion Attention U-Net to Segment the Thyroid Gland on CT Localization Images for Radiotherapy

2021 ◽  
Author(s):  
Xiaobo Wen ◽  
Biao Zhao ◽  
Meifang Yuan ◽  
Jinzhi Li ◽  
Mengzhen Sun ◽  
...  
Keyword(s):  
Thyroid Gland ◽  
Clinical Work ◽  
Similarity Coefficient ◽  
Dice Similarity Coefficient ◽  
Training Set ◽  
Data Set ◽  
Test Set ◽  
Noise Interference ◽  
Multi Scale ◽  
Validation Set

Abstract Objectives: To explore the performance of Multi-scale Fusion Attention U-net (MSFA-U-net) in thyroid gland segmentation on CT localization images for radiotherapy. Methods: CT localization images for radiotherapy of 80 patients with breast cancer or head and neck tumors were selected; label images were manually delineated by experienced radiologists. The data set was randomly divided into the training set (n=60), the validation set (n=10), and the test set (n=10). Data expansion was performed in the training set, and the performance of the MSFA-U-net model was evaluated using the evaluation indicators Dice similarity coefficient (DSC), Jaccard similarity coefficient (JSC), positive predictive value (PPV), sensitivity (SE), and Hausdorff distance (HD). Results: With the MSFA-U-net model, the DSC, JSC, PPV, SE, and HD indexes of the segmented thyroid gland in the test set were 0.8967±0.0935, 0.8219±0.1115, 0.9065±0.0940, 0.8979±0.1104, and 2.3922±0.5423, respectively. Compared with U-net, HR-net, and Attention U-net, MSFA-U-net showed that DSC increased by 0.052, 0.0376, and 0.0346 respectively; JSC increased by 0.0569, 0.0805, and 0.0433, respectively; SE increased by 0.0361, 0.1091, and 0.0831, respectively; and HD increased by −0.208, −0.1952, and −0.0548, respectively. The test set image results showed that the thyroid edges segmented by the MSFA-U-net model were closer to the standard thyroid delineated by the experts, in comparison with those segmented by the other three models. Moreover, the edges were smoother, over-anti-noise interference was stronger, and oversegmentation and undersegmentation were reduced. Conclusion: The MSFA-U-net model can meet basic clinical requirements and improve the efficiency of physicians' clinical work.

The Application of Probabilistic Neural Network in Speech Recognition Based on Partition Clustering

2012 ◽  
Vol 263-266 ◽  
pp. 2173-2178
Author(s):  
Xin Guang Li ◽  
Min Feng Yao ◽  
Li Rui Jian ◽  
Zhen Jiang Li
Keyword(s):  
Neural Network ◽  
Speech Recognition ◽  
Clustering Algorithm ◽  
Probabilistic Neural Network ◽  
Back Propagation ◽  
Back Propagation Neural Network ◽  
Data Sets ◽  
Data Set ◽  
Proposed Model ◽  
Partition Clustering

A probabilistic neural network (PNN) speech recognition model based on the partition clustering algorithm is proposed in this paper. The most important advantage of PNN is that training is easy and instantaneous. Therefore, PNN is capable of dealing with real time speech recognition. Besides, in order to increase the performance of PNN, the selection of data set is one of the most important issues. In this paper, using the partition clustering algorithm to select data is proposed. The proposed model is tested on two data sets from the field of spoken Arabic numbers, with promising results. The performance of the proposed model is compared to single back propagation neural network and integrated back propagation neural network. The final comparison result shows that the proposed model performs better than the other two neural networks, and has an accuracy rate of 92.41%.

scholarly journals Ambulatory and Laboratory Stress Detection Based on Raw Electrocardiogram Signals Using a Convolutional Neural Network

Sensors ◽  
2019 ◽  
Vol 19 (20) ◽  
pp. 4408 ◽  
Author(s):  
Hyun-Myung Cho ◽  
Heesu Park ◽  
Suh-Yeon Dong ◽  
Inchan Youn
Keyword(s):  
Neural Network ◽  
Transfer Learning ◽  
Mental Arithmetic ◽  
Small Data ◽  
Data Sets ◽  
Learning Method ◽  
Data Set ◽  
Electrocardiogram Signals ◽  
Proposed Model ◽  
Small Data Set

The goals of this study are the suggestion of a better classification method for detecting stressed states based on raw electrocardiogram (ECG) data and a method for training a deep neural network (DNN) with a smaller data set. We suggest an end-to-end architecture to detect stress using raw ECGs. The architecture consists of successive stages that contain convolutional layers. In this study, two kinds of data sets are used to train and validate the model: A driving data set and a mental arithmetic data set, which smaller than the driving data set. We apply a transfer learning method to train a model with a small data set. The proposed model shows better performance, based on receiver operating curves, than conventional methods. Compared with other DNN methods using raw ECGs, the proposed model improves the accuracy from 87.39% to 90.19%. The transfer learning method improves accuracy by 12.01% and 10.06% when 10 s and 60 s of ECG signals, respectively, are used in the model. In conclusion, our model outperforms previous models using raw ECGs from a small data set and, so, we believe that our model can significantly contribute to mobile healthcare for stress management in daily life.

scholarly journals Genome-Wide Identification of a Novel Autophagy-Related Signature for Colorectal Cancer

Dose-Response ◽  
2019 ◽  
Vol 17 (4) ◽  
pp. 155932581989417 ◽  
Author(s):  
Zhi Huang ◽  
Jie Liu ◽  
Liang Luo ◽  
Pan Sheng ◽  
Biao Wang ◽  
...  
Keyword(s):  
Colorectal Cancer ◽  
Signaling Pathway ◽  
Risk Score ◽  
Low Risk ◽  
Training Data ◽  
The Cancer Genome Atlas ◽  
Training Set ◽  
Data Set ◽  
Validation Set ◽  
Cox Analysis

Background: Plenty of evidence has suggested that autophagy plays a crucial role in the biological processes of cancers. This study aimed to screen autophagy-related genes (ARGs) and establish a novel a scoring system for colorectal cancer (CRC). Methods: Autophagy-related genes sequencing data and the corresponding clinical data of CRC in The Cancer Genome Atlas were used as training data set. The GSE39582 data set from the Gene Expression Omnibus was used as validation set. An autophagy-related signature was developed in training set using univariate Cox analysis followed by stepwise multivariate Cox analysis and assessed in the validation set. Then we analyzed the function and pathways of ARGs using Gene Ontology and Kyoto Encyclopedia of Genes and Genomes (KEGG) database. Finally, a prognostic nomogram combining the autophagy-related risk score and clinicopathological characteristics was developed according to multivariate Cox analysis. Results: After univariate and multivariate analysis, 3 ARGs were used to construct autophagy-related signature. The KEGG pathway analyses showed several significantly enriched oncological signatures, such as p53 signaling pathway, apoptosis, human cytomegalovirus infection, platinum drug resistance, necroptosis, and ErbB signaling pathway. Patients were divided into high- and low-risk groups, and patients with high risk had significantly shorter overall survival (OS) than low-risk patients in both training set and validation set. Furthermore, the nomogram for predicting 3- and 5-year OS was established based on autophagy-based risk score and clinicopathologic factors. The area under the curve and calibration curves indicated that the nomogram showed well accuracy of prediction. Conclusions: Our proposed autophagy-based signature has important prognostic value and may provide a promising tool for the development of personalized therapy.

Field applicability of a machine learning–based tensile force estimation for pre-stressed concrete bridges using an embedded elasto-magnetic sensor

2019 ◽  
Vol 19 (1) ◽  
pp. 281-292
Author(s):  
Junkyeong Kim ◽  
Seunghee Park
Keyword(s):  
Neural Network ◽  
Radial Basis Function ◽  
Basis Function ◽  
Tensile Force ◽  
Radial Basis Function Network ◽  
Feedforward Neural Network ◽  
Concrete Bridges ◽  
Force Estimation ◽  
Radial Basis ◽  
Function Network

It has been proposed that pre-stressed concrete bridges improve load performance by inducing axial pre-stress using pre-stress tendons. However, the tensile force of the pre-stress tendons could not be managed after construction, although it directly supports the load of the structure. Thus, the tensile force of the pre-stress tendon should be checked for structural health monitoring of pre-stressed concrete bridges. In this study, a machine learning–based tensile force estimation method for a pre-stressed concrete girder is proposed using an embedded elasto-magnetic sensor and machine learning method. The feedforward neural network and radial basis function network were applied to estimate the tensile force of the pre-stress tendon using the area ratio of the magnetic hysteresis curve measured by the embedded elasto-magnetic sensor. The feedforward neural network and radial basis function network were trained using 213 datasets obtained in laboratory experiments, and trained feedforward neural network and radial basis function network were applied to a 50-m real-scale pre-stressed concrete girder test for estimating tensile force. Nine embedded elasto-magnetic sensors were installed on the sheath, and the magnetic hysteresis curves of the pre-stress tendons were measured during tensioning. The area ratio was extracted and inputted to the trained feedforward neural network and radial basis function network to estimate the tensile force. The estimated tensile force was compared with the reference tensile force measured by the load cell. According to the result, the estimated tensile force can represent the actual tensile force of the pre-stress tendon without calibrating tensile force estimation algorithms at the site. In addition, it can measure the actual friction loss by estimating the tensile force at the maximum eccentric part. Based on the results, the proposed method might be a solution for the structural health monitoring of pre-stressed concrete bridges with field applicability.

MODELLING AND PREDICTION FOR CHAOTIC FIR LASER ATTRACTOR USING RATIONAL FUNCTION NEURAL NETWORK

2001 ◽  
Vol 11 (01) ◽  
pp. 89-99 ◽  
Author(s):  
Seongyun Cho
Keyword(s):  
Neural Network ◽  
Rational Function ◽  
Radial Basis Function Network ◽  
Laser System ◽  
Far Infrared ◽  
Network Architectures ◽  
Fir Laser ◽  
Currency Exchange ◽  
Currency Exchange Rate ◽  
Function Network

Many real-world systems such as irregular ECG signal, volatility of currency exchange rate and heated fluid reaction exhibit higly complex nonlinear characteristic known as chaos. These chaotic systems cannot be retreated satisfactorily using linear system theory due to its high dimensionality and irregularity. This research focuses on prediction and modelling of chaotic FIR (Far InfraRed) laser system for which the underlying equations are not given. This paper proposed a method for prediction and modelling a chaotic FIR laser time series using rational function neural network. Three network architectures, TDNN (Time Delayed Neural Network), RBF (radial basis function) network and the RF (rational function) network, are also presented. Comparisons between these networks performance show the improvements introduced by the RF network in terms of a decrement in network complexity and better ability of predictability.

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