scholarly journals Cryptosporidium infecting wild cricetid rodents from the subfamilies Arvicolinae and Neotominae

Parasitology ◽  
2017 ◽  
Vol 145 (3) ◽  
pp. 326-334 ◽  
Author(s):  
BRIANNA L. S. STENGER ◽  
MICHAELA HORČIČKOVÁ ◽  
MARK E. CLARK ◽  
MARTIN KVÁČ ◽  
ŠÁRKA ČONDLOVÁ ◽  
...  
Keyword(s):  
North America ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Myodes Glareolus ◽  
Bootstrap Support ◽  
Bank Voles ◽  
Maximum Likelihood Tree ◽  
Microtus Pinetorum ◽  
Common Voles

SUMMARYWe undertook a study on Cryptosporidium spp. in wild cricetid rodents. Fecal samples were collected from meadow voles (Microtus pennsylvanicus), southern red-backed voles (Myodes gapperi), woodland voles (Microtus pinetorum), muskrats (Ondatra zibethicus) and Peromyscus spp. mice in North America, and from bank voles (Myodes glareolus) and common voles (Microtus arvalis) in Europe. Isolates were characterized by sequence and phylogenetic analyses of the small subunit ribosomal RNA (SSU) and actin genes. Overall, 33·2% (362/1089) of cricetids tested positive for Cryptosporidium, with a greater prevalence in cricetids from North America (50·7%; 302/596) than Europe (12·1%; 60/493). Principal Coordinate analysis separated SSU sequences into three major groups (G1-G3), each represented by sequences from North American and European cricetids. A maximum likelihood tree of SSU sequences had low bootstrap support and showed G1 to be more heterogeneous than G2 or G3. Actin and concatenated actin-SSU trees, which were better resolved and had higher bootstrap support than the SSU phylogeny, showed that closely related cricetid hosts in Europe and North America are infected with closely related Cryptosporidium genotypes. Cricetids were not major reservoirs of human pathogenic Cryptosporidium spp.

scholarly journals Studies in bank voles reveal strain differences between chronic wasting disease prions from Norway and North America

2020 ◽  
Vol 117 (49) ◽  
pp. 31417-31426 ◽  
Author(s):  
Romolo Nonno ◽  
Michele A. Di Bari ◽  
Laura Pirisinu ◽  
Claudia D’Agostino ◽  
Ilaria Vanni ◽  
...  
Keyword(s):  
North America ◽  
North American ◽  
Rangifer Tarandus ◽  
Chronic Wasting Disease ◽  
Strain Differences ◽  
Myodes Glareolus ◽  
Wasting Disease ◽  
Proximate Cause ◽  
Bank Voles ◽  
Regional Deposition

Chronic wasting disease (CWD) is a relentless epidemic disorder caused by infectious prions that threatens the survival of cervid populations and raises increasing public health concerns in North America. In Europe, CWD was detected for the first time in wild Norwegian reindeer (Rangifer tarandus) and moose (Alces alces) in 2016. In this study, we aimed at comparing the strain properties of CWD prions derived from different cervid species in Norway and North America. Using a classical strain typing approach involving transmission and adaptation to bank voles (Myodes glareolus), we found that prions causing CWD in Norway induced incubation times, neuropathology, regional deposition of misfolded prion protein aggregates in the brain, and size of their protease-resistant core, different from those that characterize North American CWD. These findings show that CWD prion strains affecting Norwegian cervids are distinct from those found in North America, implying that the highly contagious North American CWD prions are not the proximate cause of the newly discovered Norwegian CWD cases. In addition, Norwegian CWD isolates showed an unexpected strain variability, with reindeer and moose being caused by different CWD strains. Our findings shed light on the origin of emergent European CWD, have significant implications for understanding the nature and the ecology of CWD in Europe, and highlight the need to assess the zoonotic potential of the new CWD strains detected in Europe.

scholarly journals In Vivo Characterization of a Bank Vole-Derived Cowpox Virus Isolate in Natural Hosts and the Rat Model

Viruses ◽  
2020 ◽  
Vol 12 (2) ◽  
pp. 237
Author(s):  
Saskia Weber ◽  
Kathrin Jeske ◽  
Rainer G. Ulrich ◽  
Christian Imholt ◽  
Jens Jacob ◽  
...  
Keyword(s):  
Bank Vole ◽  
Wistar Rats ◽  
Reservoir Host ◽  
Myodes Glareolus ◽  
Replication Capacity ◽  
Cowpox Virus ◽  
Saguinus Oedipus ◽  
Bank Voles ◽  
Common Voles

Cowpox virus (CPXV) belongs to the genus Orthopoxvirus in the Poxviridae family and is endemic in western Eurasia. Based on seroprevalence studies in different voles from continental Europe and UK, voles are suspected to be the major reservoir host. Recently, a CPXV was isolated from a bank vole (Myodes glareolus) in Germany that showed a high genetic similarity to another isolate originating from a Cotton-top tamarin (Saguinus oedipus). Here we characterize this first bank vole-derived CPXV isolate in comparison to the related tamarin-derived isolate. Both isolates grouped genetically within the provisionally called CPXV-like 3 clade. Previous phylogenetic analysis indicated that CPXV is polyphyletic and CPXV-like 3 clade represents probably a different species if categorized by the rules used for other orthopoxviruses. Experimental infection studies with bank voles, common voles (Microtus arvalis) and Wistar rats showed very clear differences. The bank vole isolate was avirulent in both common voles and Wistar rats with seroconversion seen only in the rats. In contrast, inoculated bank voles exhibited viral shedding and seroconversion for both tested CPXV isolates. In addition, bank voles infected with the tamarin-derived isolate experienced a marked weight loss. Our findings allow for the conclusion that CPXV isolates might differ in their replication capacity in different vole species and rats depending on their original host. Moreover, the results indicate host-specific differences concerning CPXV-specific virulence. Further experiments are needed to identify individual virulence and host factors involved in the susceptibility and outcome of CPXV-infections in the different reservoir hosts.

Phylogenetic relationships of human and wildlife piroplasm isolates in the western United States inferred from the 18S nuclear small subunit RNA gene

Parasitology ◽  
2000 ◽  
Vol 120 (5) ◽  
pp. 487-493 ◽  
Author(s):  
A. M. KJEMTRUP ◽  
J. THOMFORD ◽  
T. ROBINSON ◽  
P. A. CONRAD
Keyword(s):  
United States ◽  
Ribosomal Rna ◽  
Phylogenetic Relationships ◽  
Phylogenetic Analyses ◽  
Mule Deer ◽  
Odocoileus Hemionus ◽  
Small Subunit ◽  
Western United States ◽  
Ribosomal Rna Gene ◽  
Wildlife Species

The 18S nuclear small subunit ribosomal RNA gene of piroplasms from wildlife and human cases of babesiosis in the western USA were isolated by PCR and sequenced. Phylogenetic analyses of these sequences and comparisons with sequences from other Babesia and Theileria species revealed that piroplasm isolates from the human cases were indistinguishable from some of the isolates from the western wildlife species, most notably the isolates from mule deer (Odocoileus hemionus). These results suggest that large ungulates may serve as reservoirs for human piroplasm infection. The western piroplasm isolates from humans and wildlife formed a distinct clade, separate from other piroplasms found worldwide.

scholarly journals Multi-Gene Phylogeny and Taxonomy of Hydnellum (Bankeraceae, Basidiomycota) from China

2021 ◽  
Vol 7 (10) ◽  
pp. 818
Author(s):  
Yan-Hong Mu ◽  
Jia-Rui Yu ◽  
Ting Cao ◽  
Xiang-Hua Wang ◽  
Hai-Sheng Yuan
Keyword(s):  
New Species ◽  
Rna Polymerase Ii ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Morphological Characteristics ◽  
Small Subunit ◽  
Phylogenetic Position ◽  
Ribosomal Rna Gene ◽  
Morphological Studies

The genus Hydnellum is an important group of stipitate hydnaceous fungi which can form ectomycorrhiza with many species of woody plants. In recent decades, the frequency and number of basidiocarps observed in China have been declining significantly. So far, however, we know little about the species diversity of Hydnellum in China. In this study, we conducted molecular phylogenetic analyses based on sections of multiple loci, including the large subunit of nuclear ribosomal RNA gene (nLSU), the internal transcribed spacer regions (ITS), the small subunit of nuclear ribosomal RNA gene (SSU) and the second-largest subunit of RNA polymerase II gene (RPB2), as well as morphological studies, of collected samples of Hydnellum from China. We also inferred Maximum Likelihood and Bayesian phylogenies for the order Thelephorales from the dataset of the combined nLSU and ITS. This study has revealed the phylogenetic position of Hydnellum in the order Thelephorales, and phylogenetically confirmed ten major clades in Thelephorales; Twenty-nine taxa are proposed, described or reported, including 10 new subgenera (Hydnellum subgenus Hydnellum, subg. Caesispinosum, subg. Croceum, subg. Inflatum, subg. Rhizomorphum, subg. Scabrosum, subg. Spongiosum, subg. Subindufibulatum, subg. Violaceum and subg. Zonatum), 11 new species (Hydnellum atrorubrum, H. atrospinosum, H. bomiense, H. brunneorubrum, H. fibulatum, H. granulosum, H. inflatum, H. rubidofuscum, H. squamulosum, H. sulcatum and H. yunnanense), 3 newly recorded species (H. caeruleum, H. peckii and H. spongiosipes) and 5 notable specimens (Hydnellum sp 1, H. sp 2, H. sp 3, H. sp 4 and H. sp 5). A classification system based on the morphological characteristics (especially the hyphal structure types) and molecular analyses is proposed to accommodate most species in Hydnellum. The distinguishing characters of the subgenera and the new species with their closely related taxa are discussed. A key to the species of Hydnellum from China is provided.

Testing automated sensor traps for mammal field studies

2017 ◽  
Vol 44 (1) ◽  
pp. 72 ◽  
Author(s):  
E. Notz ◽  
C. Imholt ◽  
D. Reil ◽  
J. Jacob
Keyword(s):  
Temporal Patterns ◽  
The Body ◽  
Automated System ◽  
Detection Methods ◽  
Myodes Glareolus ◽  
Bank Voles ◽  
Wide Range ◽  
Sensor Signals ◽  
Common Voles ◽  
No Sensor

Context Live traps are regularly used in field and enclosure studies with mammals. In some scenarios, such as, for example, when the focus is on temporal patterns or to minimise the time animals are contained inside the trap for animal-ethics reasons, it can be highly useful to be alerted immediately when an individual is trapped. Aims In the present study, an automated system was trialed that is designed to automatically send a signal to a receiving device (pager, computer, mobile phone) when the body heat or movement of a trapped small mammal is registered by an infrared sensor (ERMINEA permanent monitoring system for rodent detection). Methods Sensors were attached to Ugglan multiple-capture traps and used in laboratory conditions and in semi-natural outdoor enclosures with common voles (Microtus arvalis) and bank voles (Myodes glareolus), as well as in the field with bank voles, Apodemus species and common voles. Sensor readings were compared to visual observation and trapping results. Key results In enclosure and field conditions, 100% and 98.7% of traps recorded captured animals correctly. There were no sensor signals when rodents moved along the outside or in the entrance compartment of the traps. Rodents sitting on the trap door triggered the sensor in 50% of cases when there was no bedding in the trap; however, there were no sensor signals if bedding was present. In laboratory trials, 20–70% of traps were falsely triggered by large insects (crickets), depending on ambient temperature and whether bedding was in the trap. Conclusions Generally, the system was a reliable, flexible and easy-to-handle tool to monitor live captures. To minimise false negatives (animals trapped without signal), testing sensor function in the pre-baiting phase and software adjustments are recommended. Implications The sensors are compatible with various trapping and other monitoring devices, providing the potential to be used in a wide range of applications. Their use is likely to optimise study designs, especially when temporal patterns are recorded or animals or samples need to be obtained soon after capture, and to minimise stress of trapped animals because they can be removed shortly after capture.

Identification of the new species Comatricha macrospora and two other recently recorded species of Comatricha from China

Phytotaxa ◽  
2018 ◽  
Vol 374 (1) ◽  
pp. 71 ◽  
Author(s):  
BO ZHANG ◽  
SAIYU WANG ◽  
XIAOQI XU ◽  
TIANHAO LI ◽  
DAN DAI ◽  
...  
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Small Subunit ◽  
Jiangxi Province ◽  
Scanning Electron Micrographs ◽  
Rna Sequences ◽  
Ribosomal Rna Sequences ◽  
First Time ◽  
A New Species

A new species (Comatricha macrospora) has been collected from the Changbai Mountain National Nature Reserve, Jilin Province, China. Comatricha macrospora has smaller sporocarps and larger spores (about 15–18 μm in diameter) than other species of Comatricha as well as a persistent peridium at the base of the sporotheca. In addition, two newly recorded species of Comatricha—C. tenerrima (M.A. Curtis) G. Lister and C. afroalpina Rammeloo—have been documented in China for the first time, based on material collected from northeast China and the campus of East China Normal University, Fuzhou City, Jiangxi Province. Comatricha tenerrima is characterised by fusiform long-stalked sporocarps and warted pinkish brown spores (about 7–8 μm in diameter)., whereas C. afroalpina occurs on rotting logs and has spores marked by larger warts with an irregular reticulation at their base. Descriptions and scanning electron micrographs for these members of the genus Comatricha are provided. Phylogenetic analyses, based on small subunit ribosomal RNA sequences (SSUrRNA) of Comatricha and related genera, were carried out using Bayesian inference. These analyses confirmed the placement of the new species in the genus Comatricha.

Description of Ektaphelenchus berbericus n. sp. (Rhabditida: Ektaphelenchinae) from eastern Iran

Nematology ◽  
2016 ◽  
Vol 18 (9) ◽  
pp. 1063-1077 ◽  
Author(s):  
Somaye Alvani ◽  
Esmat Mahdikhani-Moghadam ◽  
Robin M. Giblin-Davis ◽  
Majid Pedram
Keyword(s):  
New Species ◽  
Ribosomal Rna ◽  
Phylogenetic Analyses ◽  
Large Subunit ◽  
Small Subunit ◽  
Slight Variation ◽  
Internal Transcribed Spacer Region ◽  
Lateral Field ◽  
Ribosomal Rna Gene ◽  
Eastern Iran

Ektaphelenchus berbericus n. sp. was recovered from soil samples collected in eastern Iran and is described and illustrated based on morphological, morphometric and molecular data. The new species is characterised by having female body 512-691 μm long, lip region separated from rest of body by a shallow depression, lips separated and equally sized, 19-22 μm long stylet with wide lumen and lacking knobs or swellings at its base, cuticle with fine, but distinct transverse annuli and three lines in lateral field, excretory pore located at base of metacorpus (with slight variation in position), reproductive system monodelphic-prodelphic with spheroid and fine sperm cells inside spermatheca in some individuals and short post-vulval uterine sac (PUS), rectum and anus vestigial (invisible in few individuals), conical posterior body end (tail), narrowing at mid-point between anus and rounded tail tip, and males lacking. The new species is typologically similar to species belonging to four genera: Devibursaphelenchus, Ektaphelenchoides, Ektaphelenchus and Seinura, by a combination of morphological characters, e.g., gross morphology of stylet (lacking knobs or swellings at base), morphology of posterior body end (having short conical tail), PUS length, and having a vestigial anus and rectum in most individuals. In molecular phylogenetic analyses using sequences of the partial small subunit of the ribosomal RNA gene (SSU) and the D2-D3 expansion segments of the large subunit (LSU) ribosomal RNA gene, the new species is close to the Ektaphelenchoides/Cryptaphelenchus clade in an inferred SSU tree, and formed a clade with Ektaphelenchoides and Devibursaphelenchus spp. in a D2-D3 LSU tree. Further phylogenetic analyses using full length sequences of the internal transcribed spacer region (ITS) (= ITS1 + 5.8S + ITS2) corroborated results from the SSU and D2-D3 LSU trees, and the multilocus analyses using the combined SSU and LSU data placed the new species in a robustly supported clade with Ektaphelenchoides poinari and Devibursaphelenchus lini.

Lollipopaia minuta from Thailand, a new genus and species of the Diaporthales (Ascomycetes, Fungi) based on morphological and molecular data

2001 ◽  
Vol 79 (9) ◽  
pp. 1099-1106 ◽  
Author(s):  
Patrik Inderbitzin ◽  
Mary L Berbee
Keyword(s):  
Dna Sequences ◽  
New Genus ◽  
Phylogenetic Analyses ◽  
Molecular Data ◽  
Small Subunit ◽  
Bootstrap Support ◽  
New Genus And Species ◽  
Tropical Mycology ◽  
Close Relationship ◽  
Morphological And Molecular Data

In this paper, we describe the new genus and species Lollipopaia minuta from a tropical rain forest in Thailand. The ascomata were long beaked and seated on a pseudoparenchymatous stroma that was erumpent through the bark of a decaying branch. Mature ascomata were readily formed under laboratory conditions. Lollipopaia minuta had ascomatal walls forming a textura intricata in surface view and deliquescent paraphyses. The asci floated freely at maturity and had a nonstaining apical ring. These characters are found in the Diaporthales. However, the habit of the stroma combined with the filiform ascospores distinguished L. minuta from all known genera of the Diaporthales. Thus, a close relationship to taxa outside the Diaporthales was considered. Lollipopaia minuta was similar to Ophioceras or Pseudohalonectria in shape of the ascomata, asci, and ascospores. However, phylogenetic analyses based on small subunit ribosomal DNA sequences confirmed the placement of L. minuta within the Diaporthales with 100% bootstrap support. A closest relative within the Diaporthales was not determined.Key words: Magnaporthaceae, microfungi, taxonomy, tropical mycology.

scholarly journals Molecular characterization of a novel Ljungan virus (Parechovirus; Picornaviridae) reveals a fourth genotype and indicates ancestral recombination

2009 ◽  
Vol 90 (4) ◽  
pp. 843-853 ◽  
Author(s):  
Conny Tolf ◽  
Maria Gullberg ◽  
E. Susanne Johansson ◽  
Robert B. Tesh ◽  
Björn Andersson ◽  
...  
Keyword(s):  
Sequence Analysis ◽  
Sequence Similarity ◽  
Phylogenetic Analyses ◽  
New York State ◽  
Evolutionary Relationship ◽  
Clethrionomys Glareolus ◽  
Myodes Glareolus ◽  
Bank Voles ◽  
Ljungan Virus ◽  
New Genotype

Ljungan virus (LV) was discovered 20 years ago in Swedish bank voles (Myodes glareolus, previously referred to as Clethrionomys glareolus) during the search for an infectious agent causing lethal myocarditis in young athletes. To date, the genomes of four LV isolates, including the prototype 87-012 strain, have been characterized. Three of these LV strains were isolated from bank voles trapped in Sweden. Sequence analysis of an American virus (M1146), isolated from a montane vole (Microtus montanus) in western USA, indicates that this strain represents a genotype that is different from the Swedish strains. Here, we present genomic analyses of a fifth LV strain (64-7855) isolated from a southern red-backed vole (Myodes gapperi) trapped during arbovirus studies in New York state in the north-eastern USA in the 1960s. Sequence analysis of the 64-7855 genome showed an LV-like genome organization and sequence similarity to other LV strains. Genetic and phylogenetic analyses of the evolutionary relationship between the 64-7855 strain and other viruses within the family Picornaviridae, including previously published LV strains, demonstrated that the 64-7855 strain constitutes a new genotype within the LV species. Analyses also showed that different regions of the 64-7855 genome have different phylogenetic relationships with other LV strains, indicating that previous recombination events have been involved in the evolution of this virus.

Sign in / Sign up

Export Citation Format

Share Document