Structure of clathrin cages and coats in ice

1986 ◽  
Vol 44 ◽  
pp. 94-97
Author(s):  
G.P.A. Vigers ◽  
R.A. Crowther ◽  
B.M.F. Pearse
Keyword(s):  
Electron Microscopy ◽  
Heavy Chain ◽  
Outer Part ◽  
Coated Vesicles ◽  
Eukaryotic Cells ◽  
Coat Proteins ◽  
Terminal Domain ◽  
Clathrin Heavy Chain ◽  
Membrane Components

Clathrin forms the polyhedral cage of coated vesicles, which mediate the transfer of selected membrane components within eukaryotic cells. Clathrin cages and coated vesicles have been extensively studied by electron microscopy of negatively stained preparations and shadowed specimens. From these studies the gross morphology of the outer part of the polyhedral coat has been established and some features of the packing of clathrin trimers into the coat have also been described. However these previous studies have not revealed any internal details about the position of the terminal domain of the clathrin heavy chain, the location of the 100kd-50kd accessory coat proteins or the interactions of the coat with the enclosed membrane.

scholarly journals SCD5, a suppressor of clathrin deficiency, encodes a novel protein with a late secretory function in yeast.

1996 ◽  
Vol 7 (2) ◽  
pp. 245-260 ◽  
Author(s):  
K K Nelson ◽  
M Holmer ◽  
S K Lemmon
Keyword(s):  
Heavy Chain ◽  
Secretory Pathway ◽  
Vesicular Transport ◽  
Carboxypeptidase Y ◽  
Chain Gene ◽  
Temperature Sensitive ◽  
Coat Proteins ◽  
Clathrin Heavy Chain ◽  
Biochemical Analyses ◽  
Novel Protein

Clathrin and its associated proteins constitute a major class of coat proteins involved in vesicle budding during membrane transport. An interesting characteristic of the yeast clathrin heavy chain gene (CHC1) is that in some strains a CHC1 deletion is lethal, while in others it is not. Recently, our laboratory developed a screen that identified five multicopy suppressors that can rescue lethal strains of clathrin heavy chain-deficient yeast (Chc - scd1-i) to viability. One of these suppressors, SCD5, encodes a novel protein of 872 amino acids containing two regions of repeated motifs of unknown function. Deletion of SCD5 has shown that it is essential for cell growth at 30 degrees C. scd5-delta strains carrying low copy plasmids encoding C-terminal truncations of Scd5p are temperature sensitive for growth at 37 degrees C. At the nonpermissive temperature, cells expressing a 338-amino acid deletion (Scd5P-delta 338) accumulate an internal pool of fully glycosylated invertase and mature alpha-factor, while processing and sorting of the vacuolar hydrolase carboxypeptidase Y is normal. The truncation mutant also accumulates 80- to 100-nm vesicles similar to many late sec mutants. Moreover, at 34 degrees C, overexpression of Scd5p suppresses the temperature sensitivity of a sec2 mutant, which is blocked at a post-Golgi step of the secretory pathway. Biochemical analyses indicate that approximately 50% of Scd5p sediments with a 100,000 x g membrane fraction and is associated as a peripheral membrane protein. Overall, these results indicate that Scd5p is involved in vesicular transport at a late stage of the secretory pathway. Furthermore, this suggests that the lethality of clathrin-deficient yeast can be rescued by modulation of vesicular transport at this late secretory step.

scholarly journals Non-specificity of Pitstop 2 in clathrin-mediated endocytosis

2014 ◽  
Author(s):  
Anna K Willox ◽  
Yasmina M.E. Sahraoui ◽  
Stephen J Royle
Keyword(s):  
Heavy Chain ◽  
Membrane Trafficking ◽  
Specific Activity ◽  
Adaptor Proteins ◽  
Domain Interaction ◽  
Interaction Sites ◽  
Terminal Domain ◽  
Clathrin Heavy Chain ◽  
Potential Use ◽  
In Cells

Small molecule inhibitors of clathrin-mediated endocytosis are highly desired for the dissection of membrane trafficking pathways in the lab and for potential use as anti-infectives in the clinic. One inhibition strategy is to prevent clathrin from contacting adaptor proteins so that clathrin-mediated endocytosis cannot occur. "Pitstop" compounds have been developed which block only one of the four functional interaction sites on the N-terminal domain of clathrin heavy chain. Despite this limitation, Pitstop 2 causes profound inhibition of clathrin-mediated endocytosis. In this study, we probed for non-specific activity of Pitstop 2 by examining its action in cells expressing clathrin heavy chain harbouring mutations in the N-terminal domain interaction sites. We conclude that the inhibition observed with this compound is due to non-specificity, i.e. it causes inhibition away from its proposed mode of action. We recommend that these compounds be used with caution in cells and that they should not be used to conclude anything of the function of clathrin’s N-terminal domain.

scholarly journals An arf1Δ Synthetic Lethal Screen Identifies a New Clathrin Heavy Chain Conditional Allele That Perturbs Vacuolar Protein Transport in Saccharomyces cerevisiae

Genetics ◽  
1998 ◽  
Vol 150 (2) ◽  
pp. 577-589 ◽  
Author(s):  
Chih-Ying Chen ◽  
Todd R Graham
Keyword(s):  
Saccharomyces Cerevisiae ◽  
Heavy Chain ◽  
Protein Transport ◽  
Genetic Interaction ◽  
Synthetic Lethality ◽  
Carboxypeptidase Y ◽  
Coat Proteins ◽  
Transport Pathway ◽  
Clathrin Heavy Chain ◽  
Vacuolar Protein

Abstract ADP-ribosylation factor (ARF) is a small GTP-binding protein that is thought to regulate the assembly of coat proteins on transport vesicles. To identify factors that functionally interact with ARF, we have performed a genetic screen in Saccharomyces cerevisiae for mutations that exhibit synthetic lethality with an arf1Δ allele and defined seven genes by complementation tests (SWA1-7 for synthetically lethal with arf1Δ). Most of the swa mutants exhibit phenotypes comparable to arf1Δ mutants such as temperature-conditional growth, hypersensitivity to fluoride ions, and partial protein transport and glycosylation defects. Here, we report that swa5-1 is a new temperature-sensitive allele of the clathrin heavy chain gene (chc1-5), which carries a frameshift mutation near the 3′ end of the CHC1 open reading frame. This genetic interaction between arf1 and chc1 provides in vivo evidence for a role for ARF in clathrin coat assembly. Surprisingly, strains harboring chc1-5 exhibited a significant defect in transport of carboxypeptidase Y or carboxypeptidase S to the vacuole that was not observed in other chc1 ts mutants. The kinetics of invertase secretion or transport of alkaline phosphatase to the vacuole were not significantly affected in the chc1-5 mutant, further implicating clathrin specifically in the Golgi to vacuole transport pathway for carboxypeptidase Y.

scholarly journals John Briggs: A closer look at HIV and coated vesicles

2013 ◽  
Vol 201 (7) ◽  
pp. 966-967
Author(s):  
Caitlin Sedwick
Keyword(s):  
Electron Microscopy ◽  
Coated Vesicles ◽  
Coat Proteins ◽  
Cryo Electron Microscopy

Briggs studies the organization of viral and cellular coat proteins using cryo-electron microscopy.

scholarly journals The structures of natively assembled clathrin-coated vesicles

2020 ◽  
Vol 6 (30) ◽  
pp. eaba8397 ◽  
Author(s):  
Mohammadreza Paraan ◽  
Joshua Mendez ◽  
Savanna Sharum ◽  
Danielle Kurtin ◽  
Huan He ◽  
...  
Keyword(s):  
Heavy Chain ◽  
Light Chain ◽  
Associated Factors ◽  
Structural Model ◽  
Protein Complexes ◽  
Adaptor Protein ◽  
Coated Vesicles ◽  
Clathrin Heavy Chain ◽  
Assembled Complexes ◽  
The Individual

Clathrin-coated vesicles mediate trafficking of proteins and nutrients in the cell and between organelles. Proteins included in the clathrin-coated vesicles (CCVs) category include clathrin heavy chain (CHC), clathrin light chain (CLC), and a variety of adaptor protein complexes. Much is known about the structures of the individual CCV components, but data are lacking about the structures of the fully assembled complexes together with membrane and in complex with cargo. Here, we determined the structures of natively assembled CCVs in a variety of geometries. We show that the adaptor β2 appendages crosslink adjacent CHC β-propellers and that the appendage densities are enriched in CCV hexagonal faces. We resolve how adaptor protein 2 and other associated factors in hexagonal faces form an assembly hub with an extensive web of interactions between neighboring β-propellers and propose a structural model that explains how adaptor binding can direct the formation of pentagonal and hexagonal faces.

Plant clathrin heavy chain: sequence analysis and restricted localisation in growing pollen tubes

1996 ◽  
Vol 109 (4) ◽  
pp. 777-786 ◽  
Author(s):  
H.D. Blackbourn ◽  
A.P. Jackson
Keyword(s):  
Plasma Membrane ◽  
Heavy Chain ◽  
Coiled Coil ◽  
Pollen Tubes ◽  
Peptide Sequencing ◽  
Coated Vesicles ◽  
Membrane Recycling ◽  
Clathrin Heavy Chain ◽  
Partial Clone ◽  
Sds Page

Clathrin-coated vesicles were isolated from soybean (Glycine max L.) cells in suspension culture and their purity was assessed using SDS-PAGE, peptide sequencing and electron microscopy. Antibodies raised to these coated vesicles were used to immunoscreen a soybean cDNA library in lambda gt11 and isolate a partial clone of the clathrin heavy chain (HC) gene. Full-length cDNA for soybean clathrin HC was deduced by 5′ and 3′ cDNA amplification. The cDNA encodes an amino acid sequence of 1,700 residues, which is slightly larger than rat clathrin HC and may account for the reduced mobility of plant clathrin on SDS-PAGE. Insertion of these extra residues is largely confined to the amino and carboxy termini. Other domains within the heavy chain arms, including those implicated in light chain binding and trimerisation, are relatively well conserved between eukaryotes. A computer algorithm to determine alpha-helical coiled-coil structures reveals that only one domain, aligning to residues 1,460-1,489 in rat clathrin HC, has a high probability for coiled-coil structure in all five eukaryotic clathrin HC sequences. This provides further evidence that the interaction between clathrin heavy and light chains is mediated by three bundles of coiled-coils near to the carboxy terminus. In analysing the role of plant clathrin in endocytotic trafficking, as against trafficking from the Golgi apparatus to the vacuole, our attention was focused on membrane recycling in tip-growing pollen tubes. These rapidly growing cells are highly secretory and require a high level of plasma membrane recycling to maintain the tube tip architecture. Monoclonal antibodies to plant clathrin HC confirmed that coated vesicles are relatively abundant in tip-growing pollen tubes of Lilium longiflorum. This analysis also demonstrated that a high proportion of the clathrin present is in an assembled state, suggesting a highly dynamic trafficking pathway. Immunofluorescence analysis of pollen tubes revealed that clathrin localises to the plasma membrane at the apex of the pollen tube tip, which is consistent with high levels of clathrin-mediated membrane recycling. The use of these reagents in conjunction with tip-growing pollen tubes has created a unique opportunity to examine the basis for constitutive endocytosis, so that the more complex question of receptor-mediated pathways in plants can also be assessed.

Developmental and morphological regulation of clathrin-mediated endocytosis inTrypanosoma brucei

2001 ◽  
Vol 114 (14) ◽  
pp. 2605-2615 ◽  
Author(s):  
Gareth W. Morgan ◽  
Clare L. Allen ◽  
Tim R. Jeffries ◽  
Michael Hollinshead ◽  
Mark C. Field
Keyword(s):  
Heavy Chain ◽  
Developmental Regulation ◽  
Bloodstream Form ◽  
Host Immune System ◽  
Coat Proteins ◽  
Flagellar Pocket ◽  
Coated Pits ◽  
Ultrastructural Studies ◽  
Clathrin Heavy Chain ◽  
Collecting Tubules

Essentially all macromolecular communication between Trypanosoma brucei and its host is confined to vesicular trafficking events occurring at or around the flagellar pocket. The vertebrate stage bloodstream form trypomastigote exhibits an extremely high rate of endocytosis required for nutrient uptake and probably also evasion of the host immune system. However, the rate of endocytosis is very low in the procyclic vector parasite, indicating that endocytosis is subject to a marked level of developmental regulation. Previous ultrastructural studies and crude biochemical fractionations have indicated the presence of coated pits and vesicles that are analogous to clathrin coats in the bloodstream form, but not in the procyclic. However, a definitive description of the components of this coat and its molecular function in T. brucei has remained elusive. We describe the molecular cloning and initial characterisation of components of the T. brucei endocytic coats: clathrin heavy chain (TbCLH) and a β-adaptin (TbAPβ1). TbCLH is markedly upregulated in the bloodstream form compared with the procyclic, whereas TbAPβ1 is subject to more limited developmental regulation. We generated antisera against both proteins and show that the clathrin coat is tightly associated with the flagellar pocket in both major life stages. However, in bloodstream parasites TbCLH is also extensively distributed throughout the posterior end of the cell on numerous large vesicular and tubular structures. By cryoimmuno EM, clathrin is localised to collecting tubules at the flagellar pocket and is also associated with the trans-Golgi network. These EM data confirm that the electron dense coats reported on trypanosome vesicles and tubules contain clathrin. The TbAPβ1 exhibits an atypical distribution relative to previously characterised adaptins, associating not only with the trans-Golgi but also with other tubular-vesicular elements. Localisation of TbAPβ1 is also subject to developmental regulation. These data describe major endocytic coat proteins in T. brucei for the first time, and indicate stage-specific expression of the clathrin heavy chain. Modulation of clathrin expression is likely to be an important factor in the developmental regulation of endocytosis and recycling in the African trypanosome.

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