scholarly journals Effect of protein supplementation on ruminal parameters and microbial community fingerprint of Nellore steers fed tropical forages

animal ◽  
2016 ◽  
Vol 10 (1) ◽  
pp. 44-54 ◽  
Author(s):  
C.B.P. Bento ◽  
A.C. Azevedo ◽  
D.I. Gomes ◽  
E.D. Batista ◽  
L.M.A. Rufino ◽  
...  
2003 ◽  
Vol 69 (11) ◽  
pp. 6768-6776 ◽  
Author(s):  
Angela D. Kent ◽  
Dan J. Smith ◽  
Barbara J. Benson ◽  
Eric W. Triplett

ABSTRACT Culture-independent DNA fingerprints are commonly used to assess the diversity of a microbial community. However, relating species composition to community profiles produced by community fingerprint methods is not straightforward. Terminal restriction fragment length polymorphism (T-RFLP) is a community fingerprint method in which phylogenetic assignments may be inferred from the terminal restriction fragment (T-RF) sizes through the use of web-based resources that predict T-RF sizes for known bacteria. The process quickly becomes computationally intensive due to the need to analyze profiles produced by multiple restriction digests and the complexity of profiles generated by natural microbial communities. A web-based tool is described here that rapidly generates phylogenetic assignments from submitted community T-RFLP profiles based on a database of fragments produced by known 16S rRNA gene sequences. Users have the option of submitting a customized database generated from unpublished sequences or from a gene other than the 16S rRNA gene. This phylogenetic assignment tool allows users to employ T-RFLP to simultaneously analyze microbial community diversity and species composition. An analysis of the variability of bacterial species composition throughout the water column in a humic lake was carried out to demonstrate the functionality of the phylogenetic assignment tool. This method was validated by comparing the results generated by this program with results from a 16S rRNA gene clone library.


2020 ◽  
Vol 29 (11) ◽  
pp. 1021
Author(s):  
Nicole A. Christiansen ◽  
Kirstie A. Fryirs ◽  
Timothy J. Green ◽  
Grant C. Hose

Fire in wetlands is poorly understood, yet hazard reduction burns are a common management practice and bushfires are becoming increasingly prevalent because of climate change. Fire may have long-lasting implications for the microbial component of these wetland ecosystems that regulate carbon and nutrient cycling. The extremely fire-prone Blue Mountains World Heritage Area in south-eastern Australia contains hundreds of endangered peat-forming upland swamps that regularly experience both bushfires and hazard reduction burns. In a before–after control–­impact study, we surveyed the sediment microbial community of these swamps to test the impact of a low-intensity hazard reduction burn. Along with sediment pH, moisture and organic content, we measured gene abundances including those relating to carbon cycling (quantitative PCR (qPCR) of pmoA, mcrA, bacterial 16S rRNA and archaeal 16S rRNA), and bacteria community fingerprint (terminal restriction fragment length polymorphism (T-RFLP)). One year after the hazard reduction burn, there were no significant differences in the gene abundances or microbial community fingerprint that could be attributed to the fire, suggesting that the hazard reduction burn did not have a long-term impact on these microbial communities.


2020 ◽  
Vol 48 (2) ◽  
pp. 399-409
Author(s):  
Baizhen Gao ◽  
Rushant Sabnis ◽  
Tommaso Costantini ◽  
Robert Jinkerson ◽  
Qing Sun

Microbial communities drive diverse processes that impact nearly everything on this planet, from global biogeochemical cycles to human health. Harnessing the power of these microorganisms could provide solutions to many of the challenges that face society. However, naturally occurring microbial communities are not optimized for anthropogenic use. An emerging area of research is focusing on engineering synthetic microbial communities to carry out predefined functions. Microbial community engineers are applying design principles like top-down and bottom-up approaches to create synthetic microbial communities having a myriad of real-life applications in health care, disease prevention, and environmental remediation. Multiple genetic engineering tools and delivery approaches can be used to ‘knock-in' new gene functions into microbial communities. A systematic study of the microbial interactions, community assembling principles, and engineering tools are necessary for us to understand the microbial community and to better utilize them. Continued analysis and effort are required to further the current and potential applications of synthetic microbial communities.


2020 ◽  
Vol 158 (3) ◽  
pp. S66
Author(s):  
Venu Lagishetty ◽  
Nerea Arias ◽  
Tien Dong ◽  
Meg Hauer ◽  
William Katzka ◽  
...  

2009 ◽  
Vol 27 (4) ◽  
pp. 385-387
Author(s):  
W. D. Eaton ◽  
B. Wilmot ◽  
E. Epler ◽  
S. Mangiamelli ◽  
D. Barry

Sign in / Sign up

Export Citation Format

Share Document