MORPHOSOURCE: ARCHIVING AND SHARING 3-D DIGITAL SPECIMEN DATA

2016 ◽  
Vol 22 ◽  
pp. 157-181 ◽  
Author(s):  
Doug M. Boyer ◽  
Gregg F. Gunnell ◽  
Seth Kaufman ◽  
Timothy M. McGeary

AbstractAdvancement of understanding in paleontology and biology has always been hindered by difficulty in accessing comparative data. With current and burgeoning technology, the severity of this hindrance can be substantially reduced. Researchers and museum personnel generating three-dimensional (3-D) digital models of museum specimens can archive them using internet repositories that can then be explored and utilized by other researchers and private individuals without a museum trip. We focus on MorphoSource, the largest web archive for 3-D museum data at present. We describe the site, how to use it most effectively in its current form, and best practices for file formats and metadata inclusion to aid the growing community wishing to utilize it for distributing 3-D digital data. The potential rewards of successfully crowd sourcing the digitization of museum collections from the research community are great, as it should ensure rapid availability of the most important datasets. Challenges include long-term governance (i.e., maintaining site functionality, supporting large amounts of digital storage, and monitoring/updating file to prevent bit rot, which is the slow and random corruption of electronic data over time, and data format obsolescence, which is the problem of data becoming unreadable or ineffective because of the loss of functional software necessary for access), and utilization by the community (i.e., detecting and minimizing user error in creating data records, incentivizing data sharing by researchers and institutions alike, and protecting stakeholder rights to data, while maximizing accessibility and discoverability).MorphoSource serves as a proof-of-concept of how these kinds of challenges can be met. Accordingly, it is generally recognized as the most appropriate repository for large, raw datasets of fossil organisms and/or comparative samples. Its existence has begun to transform data transparency standards because journal reviewers, editors, and grant officers now often suggest or require that 3-D data be made available through this site.

Author(s):  
C. Ellul ◽  
J. P. de Almeida ◽  
R. Romano

The Municipality of Coimbra in Portugal, and indeed the country as a whole, is currently undergoing a long-term land registration (cadastre creation) exercise, with approximately 50&amp;thinsp;% of the country having been surveyed, amounting to 1/3 of the total properties, by the end of 2013. The survey process is currently generating two-dimensional (2D) maps. However, as with many other countries, these maps have limitations when representing the real three-dimensional (3D) complexities of land and property ownership. Capturing 2D cadastre is an expensive process, and does not provide the required insight into the number of properties where the ownership situation is inadequately represented, as the survey does not include the internal building structure. Having information about the extent of the 2D/3D issue is, however, fundamental to making a decision as to whether to invest resources in even more expensive 3D survey. <br><br> Given that the 3D complexity inside buildings is only known to residents/occupants - thus making crowd sourcing perhaps the only economically feasible approach for its capture - this paper describes the development of a web-based App envisaged for use by the general public to flag different land and property ownership situations. The paper focuses on two aspects of the problem - firstly, identifying an appropriate, clear, set of diagrams depicting the various different ownership situations from which the user can then pick one, and secondly prototyping and user testing an App for multi-platform VGI data capture in absence of direct feedback from the final end users - i.e. the general public.


2009 ◽  
Vol 4 (3) ◽  
pp. 104-122 ◽  
Author(s):  
Richard Wright ◽  
Ant Miller ◽  
Matthew Addis

As storage costs drop, storage is becoming the lowest cost in a digital repository – and the biggest risk. We examine current modelling of costs and risks in digital preservation, concentrating on the Total Cost of Risk when using digital storage systems for preserving audiovisual material. We review the vital role of storage and show how planning for long-term preservation of data should consider the risks involved in using digital storage technology. Gaps in information necessary for accurate modelling – and planning – are presented. We call for new functionality to support recovery of files with errors, to eliminate the all-or-nothing approach of current IT systems, which in turn reduces the impact of failures of digital storage technology and mitigates against loss of digital data.


Author(s):  
C.L. Woodcock

Despite the potential of the technique, electron tomography has yet to be widely used by biologists. This is in part related to the rather daunting list of equipment and expertise that are required. Thanks to continuing advances in theory and instrumentation, tomography is now more feasible for the non-specialist. One barrier that has essentially disappeared is the expense of computational resources. In view of this progress, it is time to give more attention to practical issues that need to be considered when embarking on a tomographic project. The following recommendations and comments are derived from experience gained during two long-term collaborative projects.Tomographic reconstruction results in a three dimensional description of an individual EM specimen, most commonly a section, and is therefore applicable to problems in which ultrastructural details within the thickness of the specimen are obscured in single micrographs. Information that can be recovered using tomography includes the 3D shape of particles, and the arrangement and dispostion of overlapping fibrous and membranous structures.


2020 ◽  
Vol 36 (06) ◽  
pp. 696-702
Author(s):  
Nolan B. Seim ◽  
Enver Ozer ◽  
Sasha Valentin ◽  
Amit Agrawal ◽  
Mead VanPutten ◽  
...  

AbstractResection and reconstruction of midface involve complex ablative and reconstructive tools in head and oncology and maxillofacial prosthodontics. This region is extraordinarily important for long-term aesthetic and functional performance. From a reconstructive standpoint, this region has always been known to present challenges to a reconstructive surgeon due to the complex three-dimensional anatomy, the variable defects created, combination of the medical and dental functionalities, and the distance from reliable donor vessels for free tissue transfer. Another challenge one faces is the unique features of each individual resection defect as well as individual patient factors making each preoperative planning session and reconstruction unique. Understanding the long-term effects on speech, swallowing, and vision, one should routinely utilize a multidisciplinary approach to resection and reconstruction, including head and neck reconstructive surgeons, prosthodontists, speech language pathologists, oculoplastic surgeons, dentists, and/or craniofacial teams as indicated and with each practice pattern. With this in mind, we present our planning and reconstructive algorithm in midface reconstruction, including a dedicated focus on dental rehabilitation via custom presurgical planning.


Author(s):  
Tingting Xia ◽  
Chengfei Xu ◽  
Pengfei Dai ◽  
Xiaoyun Li ◽  
Riming Lin ◽  
...  

Three-dimensional (3D) conductive polymers are promising conductive matrices for electrode materials toward electrochemical energy storage. However, their fragile nature and weak binding forces with active materials could not guarantee long-term...


2021 ◽  
pp. 112067212110000
Author(s):  
Annabel LW Groot ◽  
Jelmer S Remmers ◽  
Roel JHM Kloos ◽  
Peerooz Saeed ◽  
Dyonne T Hartong

Purpose: Recurrent contracted sockets are complex situations where previous surgeries have failed, disabling the wear of an ocular prosthesis. A combined method of surgery and long-term fixation using custom-made, three-dimensional (3D) printed conformers is evaluated. Methods: Retrospective case series of nine patients with recurrent excessive socket contraction and inability to wear a prosthesis, caused by chemical burns ( n = 3), fireworks ( n = 3), trauma ( n = 2) and enucleation and radiotherapy at childhood due to optic nerve glioma ( n = 1) with three average previous socket surgeries (range 2–6). Treatment consisted of a buccal mucosal graft and personalized 3D-printed conformer designed to be fixated to the periosteum and tarsal plates for minimal 2 months. Primary outcome was the retention of an ocular prosthesis. Secondary outcome was the need for additional surgeries. Results: Outcomes were measured at final follow-up between 7 and 36 months postoperatively (mean 20 months). Eight cases were able to wear an ocular prosthesis after 2 months. Three cases initially treated for only the upper or only the lower fornix needed subsequent surgery for the opposite fornix for functional reasons. Two cases had later surgery for cosmetic improvement of upper eyelid position. Despite pre-existing lid abnormalities (scar, entropion, lash deficiency), cosmetic outcome was judged highly acceptable in six cases because of symmetric contour and volume, and reasonably acceptable in the remaining two. Conclusions: Buccal mucosal transplant fixated with a personalized 3D-designed conformer enables retention of a well-fitted ocular prosthesis in previously failed socket surgeries. Initial treatment of both upper and lower fornices is recommended to avoid subsequent surgeries for functional reasons.


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