<p>Hyporheic exchange is transient in nature, considering the temporal fluctuations in hydrological and/or biogeochemical conditions in surface water and groundwater (SW/GW).&#160; Efforts are needed to further identify the patterns and driving mechanisms of transient hyporheic exchange.&#160; This study combined a reach-scale field survey and numerical modeling analysis to reveal the pattern of transient hyporheic exchange during rainfall events in the Zhongtian River, southeast of China. Field observations revealed hydrodynamic properties and temperature variations in SW/GW, suggesting that the regional groundwater recharged the study reach.&#160; A one-dimensional heat transport solution was built and used to generate the planar and cross-sectional hyporheic flow fields. A two-step numerical modeling procedure, including a hydraulic surface flow model and a groundwater flow model, was then used to simulate the observed flow system. The hyporheic exchange exhibited strong temporal evolution, as indicated by the rainfall event-driven hyporheic exchange, the depth-dependent hysteretic response to rainfall, and the area of local downwelling flow increasing with rainfall. Dynamics of the hyporheic exchange in the study reach, therefore, significantly changed in space and time due to rainfall. The reversal of hydraulic gradient and transient hyporheic exchange were observed and validated using the numerical simulation. Anisotropic hydraulic conductivity is the key to generate transient hyporheic exchange. A revised conceptual model was used to interpret the observed temporal patterns in hyporheic exchange &#160;The pattern of transient hyporheic exchange indicates that transient hyporheic exchange only appears after an increased phase of river stage but does not last for a long time. The temporal pattern of hyporheic exchange can significantly affect the evolution of biogeochemical processes in the hyporheic zone for a gaining stream by, for example, temporally facilitating special biogeochemical processes.</p>
