scholarly journals A survival selection strategy for engineering synthetic binding proteins that specifically recognize post-translationally phosphorylated proteins

2019 ◽  
Vol 10 (1) ◽  
Author(s):  
Bunyarit Meksiriporn ◽  
Morgan B. Ludwicki ◽  
Erin A. Stephens ◽  
Allen Jiang ◽  
Hyeon-Cheol Lee ◽  
...  
2010 ◽  
Vol 2 (3) ◽  
pp. 12-15 ◽  
Author(s):  
Lorentz JÄNTSCHI ◽  
Sorana D. BOLBOACĂ ◽  
Mugur C. BĂLAN ◽  
Radu E. SESTRAS ◽  
Mircea V. DIUDEA

The efficiency of a genetic algorithm is frequently assessed using a series of operators of evolution like crossover operators, mutation operators or other dynamic parameters. The present paper aimed to review the main results of evolution supervised by genetic algorithms used to identify solutions to agricultural and horticultural hard problems and to discuss the results of using a genetic algorithms on structure-activity relationships in terms of behavior of evolution supervised by genetic algorithms. A genetic algorithm had been developed and implemented in order to identify the optimal solution in term of estimation power of a multiple linear regression approach for structure-activity relationships. Three survival and three selection strategies (proportional, deterministic and tournament) were investigated in order to identify the best survival-selection strategy able to lead to the model with higher estimation power. The Molecular Descriptors Family for structure characterization of a sample of 206 polychlorinated biphenyls with measured octanol-water partition coefficients was used as case study. Evolution using different selection and survival strategies proved to create populations of genotypes living in the evolution space with different diversity and variability. Under a series of criteria of comparisons these populations proved to be grouped and the groups were showed to be statistically different one to each other. The conclusions about genetic algorithm evolution according to a number of criteria were also highlighted.


Author(s):  
J. Jakana ◽  
M.F. Schmid ◽  
P. Matsudaira ◽  
W. Chiu

Actin is a protein found in all eukaryotic cells. In its polymerized form, the cells use it for motility, cytokinesis and for cytoskeletal support. An example of this latter class is the actin bundle in the acrosomal process from the Limulus sperm. The different functions actin performs seem to arise from its interaction with the actin binding proteins. A 3-dimensional structure of this macromolecular assembly is essential to provide a structural basis for understanding this interaction in relationship to its development and functions.


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