scholarly journals Author Correction: Phase separation drives the self-assembly of mitochondrial nucleoids for transcriptional modulation

Author(s):  
Qi Long ◽  
Yanshuang Zhou ◽  
Hao Wu ◽  
Shiwei Du ◽  
Mingli Hu ◽  
...  
2017 ◽  
Vol 5 (7) ◽  
pp. 3358-3370 ◽  
Author(s):  
Yizhou Zhang ◽  
Ryan A. Mulvenna ◽  
Bryan W. Boudouris ◽  
William A. Phillip

Block polymer membranes in the hollow fiber geometry were fabricated by combining the dip-coating archetype with the self-assembly and non-solvent induced phase separation method.


2018 ◽  
Vol 54 (75) ◽  
pp. 10570-10573 ◽  
Author(s):  
Linghao Yan ◽  
Guowen Kuang ◽  
Nian Lin

We find a phase separation and selective guest–host inclusion in the self-assembly of trimesic acid, benzenetribenzoic acid and coronene on Au(111).


2019 ◽  
Author(s):  
Marina Feric ◽  
Tyler G. Demarest ◽  
Jane Tian ◽  
Deborah L. Croteau ◽  
Vilhelm A. Bohr ◽  
...  

SummaryMitochondria contain an autonomous and spatially segregated genome. The organizational unit of their genome is the nucleoid, which consists of mitochondrial DNA (mtDNA) and associated architectural proteins. Here, we show that phase separation is the primary physical mechanism for assembly and size-control of the mitochondrial nucleoid. The major mtDNA-binding protein TFAM spontaneously phase separates in vitro via weak, multivalent interactions into viscoelastic droplets with slow internal dynamics. In combination, TFAM and mtDNA form multiphase, gel-like structures in vitro, which recapitulate the in vivo dynamic behavior of mt-nucleoids. Enlarged, phase-separated, yet transcriptionally active, nucleoids are present in mitochondria from patients with the premature aging disorder Hutchinson-Gilford Progeria Syndrome (HGPS) and are associated with mitochondrial dysfunction. These results point to phase separation as an evolutionarily conserved mechanism of genome organization.HighlightsMitochondrial genomes are organized by phase separation.The main packaging protein TFAM and mtDNA combine to form viscoelastic, multiphase droplets in vitro.Mitochondrial nucleoids exhibit phase behavior in vivo, including dynamic rearrangements and heterogenous organization.Coalescence and enlargement of mt-nucleoids occur upon loss of mitochondrial homeostasis as well as in prematurely aged cells and are associated with mitochondrial dysfunction.


2022 ◽  
Author(s):  
Gaurav Kumar ◽  
Sharmistha Sinha

Bacterial microcompartments are substrate specific metabolic modules that are conditionally expressed in certain bacterial species. These all protein structures have size in the range of 100-150 nm and are formed by the self-assembly of thousands of protein subunits, all encoded by genes belonging to a single operon. The operon contains genes that encode for both enzymes and shell proteins. The shell proteins self-assemble to form the outer coat of the compartment and enzymes are encapsulated within. A perplexing question in MCP biology is to understand the mechanism which governs the formation of these small yet complex assemblages of proteins. In this work we use 1,2-propanediol utilization microcompartments (PduMCP) as a paradigm to identify the factors that drive the self-assembly of MCP proteins. We find that a major shell protein PduBB tend to self-assemble under macromolecular crowded environment and suitable ionic strength. Microscopic visualization and biophysical studies reveal phase separation to be the principle mechanism behind the self-association of shell protein in the presence of salts and macromolecular crowding. The shell protein PduBB interacts with the enzyme diol-dehydratase PduCDE and co-assemble into phase separated liquid droplets. The co-assembly of PduCDE and PduBB results in the enhancement of catalytic activity of the enzyme. A combination of spectroscopic and biochemical techniques shows the relevance of divalent cation Mg2+ in providing stability to intact PduMCP in vivo. Together our results suggest a combination of protein-protein interactions and phase separation guiding the self-assembly of Pdu shell protein and enzyme in solution phase.


2021 ◽  
Vol 40 (6) ◽  
Author(s):  
Marina Feric ◽  
Tyler G Demarest ◽  
Jane Tian ◽  
Deborah L Croteau ◽  
Vilhelm A Bohr ◽  
...  

MRS Advances ◽  
2019 ◽  
Vol 4 (22) ◽  
pp. 1309-1314 ◽  
Author(s):  
Anusuya Pal ◽  
Amalesh Gope ◽  
Germano S. Iannacchione

ABSTRACTThe drying process, self-assembly of the proteins and the phase separation of a thermotropic liquid crystal (LC) from an initial aqueous solution represent a rich area of study. A focus of this work is to compare the behavior of two different proteins, bovine serum albumin [BSA] and lysozyme [Lys] in the ternary system through optical microscopy. During the drying process, the intensity profile shows three regimes in the presence of LC whereas no intensity variation is observed in its absence in both protein drops. The striking outcome is the presence of an umbilical defect of [+1] strength in every domain near the edge of BSA drop, whereas, each domain has a central dark region surrounded by a bright region in the dried Lys drop. Finally, the crack spacing in the dried Lys drop is reduced in the presence of LC whereas, no significant difference is found in the dried BSA drop.


2007 ◽  
Vol 353-358 ◽  
pp. 3076-3079
Author(s):  
Ling Bin Lu ◽  
Ke Long Huang ◽  
Feng Wen

Based on COMPASS forcefield, the relationship between microstructure and macroscopic properties of poly (propylene-co-γ-butyrolactone carbonate) (PPCG) was firstly investigated with ‘Materials Studio’ simulation soft successfully. The results of simulation showed that the molecular chain of PPCG was flexible. Degradable carbonic and carboxylic ester groups were distributed outside the PPCG cell. Furthermore the structure of micro-phase separation was observed in PPCG cell. The structure of micro-phase separation of PPCG can be applied to the self-assembly of drug molecule.


2013 ◽  
Vol 111 (22-23) ◽  
pp. 3608-3617 ◽  
Author(s):  
Simone Dussi ◽  
Lorenzo Rovigatti ◽  
Francesco Sciortino

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