scholarly journals Understanding adsorption geometry of organometallic molecules on graphite

2021 ◽  
Vol 11 (1) ◽  
Author(s):  
Seungtaek Oh ◽  
Jungyoon Seo ◽  
Giheon Choi ◽  
Hwa Sung Lee
Keyword(s):  
Pyrolytic Graphite ◽  
Molecular Geometry ◽  
Theoretical Background ◽  
Hexagonal Structure ◽  
Atomic Resolution ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Molecular Configuration ◽  
Graphene Surface ◽  
Organometallic Molecules

AbstractTo comprehensively investigate the adsorption geometries of organometallic molecules on graphene, Cp*Ru+ fragments as an organometallic molecule is bound on highly oriented pyrolytic graphite and imaged at atomic resolution using scanning tunneling microscopy (STM) (Cp* = pentamethylcyclopentadienyl). Atomic resolution imaging through STM shows that the Cp*Ru+ fragments are localized above the hollow position of the hexagonal structure, and that the first graphene layer adsorbed with the fragments on the graphite redeveloped morphologically to minimize its geometric energy. For a better understanding of the adsorption site and molecular geometry, experimental results are compared with computed calculations for the graphene surface with Cp*Ru+ fragments. These calculations show the adsorption geometries of the fragment on the graphene surface and the relationship between the geometric energy and molecular configuration. Our results provide the chemical anchoring geometry of molecules on the graphene surface, thereby imparting the theoretical background necessary for controlling the various properties of graphene in the future.

Understanding Adsorption Geometry of Organometallic Molecules on Graphene

2021 ◽  
Author(s):  
Seungtaek Oh ◽  
Jungyoon Seo ◽  
Giheon Choi ◽  
Hwa Sung Lee
Keyword(s):  
Pyrolytic Graphite ◽  
Molecular Geometry ◽  
Theoretical Background ◽  
Hexagonal Structure ◽  
Atomic Resolution ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Molecular Configuration ◽  
Graphene Surface ◽  
Organometallic Molecules

Abstract To comprehensively investigate the adsorption geometries and behaviors of organometallic molecules on graphene, Cp*Ru+ fragments as an organometallic molecule is bound on highly oriented pyrolytic graphite and imaged at atomic resolution using scanning tunneling microscopy (STM) (Cp* = pentamethylcyclopentadienyl). Atomic resolution imaging through STM shows that the Cp*Ru+ fragments are localized above the hollow position of the hexagonal structure, and that the graphene surface adsorbed with the fragments redeveloped morphologically to minimize its geometric energy. For a better understanding of the adsorption site and molecular geometry, experimental results are compared with computed calculations for the graphene surface with Cp*Ru+ fragments. These calculations show the adsorption geometries of the fragment on the graphene surface and the relationship between the geometric energy and molecular configuration. Our results provide the chemical anchoring geometry of molecules on the graphene surface, thereby imparting the theoretical background necessary for controlling the electrical/physical properties of graphene in the future.

Scanning tunneling microscopy of E. coli RNA polymerase deposited onto an Au substrate by an electrochemical process

1991 ◽  
Vol 49 ◽  
pp. 378-379
Author(s):  
Rebecca W. Keller ◽  
Carlos Bustamante ◽  
David Bear
Keyword(s):  
Scanning Tunneling Microscope ◽  
Biological Sample ◽  
Substrate Surface ◽  
Electrochemical Process ◽  
Atomic Resolution ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Tunneling Microscope ◽  
E Coli ◽  
Preparation Techniques

Under ideal conditions, the Scanning Tunneling Microscope (STM) can create atomic resolution images of different kinds of samples. The STM can also be operated in a variety of non-vacuum environments. Because of its potentially high resolution and flexibility of operation, it is now being applied to image biological systems. Several groups have communicated the imaging of double and single stranded DNA.However, reproducibility is still the main problem with most STM results on biological samples. One source of irreproducibility is unreliable sample preparation techniques. Traditional deposition methods used in electron microscopy, such as glow discharge and spreading techniques, do not appear to work with STM. It seems that these techniques do not fix the biological sample strongly enough to the substrate surface. There is now evidence that there are strong forces between the STM tip and the sample and, unless the sample is strongly bound to the surface, it can be swept aside by the tip.

Quantitative Scanning Tunneling Microscopy at Atomic Resolution: Influence of Forces and Tip Configuration

1996 ◽  
Vol 76 (8) ◽  
pp. 1276-1279 ◽  
Author(s):  
A. R. H. Clarke ◽  
J. B. Pethica ◽  
J. A. Nieminen ◽  
F. Besenbacher ◽  
E. Lægsgaard ◽  
...  
Keyword(s):  
Scanning Tunneling Microscopy ◽  
Atomic Resolution ◽  
Scanning Tunneling ◽  
Tunneling Microscopy

scholarly journals Mono- and multilayers of molecular spoked carbazole wheels on graphite

2014 ◽  
Vol 10 ◽  
pp. 2783-2788 ◽  
Author(s):  
Stefan-S Jester ◽  
A Vikas Aggarwal ◽  
Daniel Kalle ◽  
Sigurd Höger
Keyword(s):  
Octanoic Acid ◽  
Pyrolytic Graphite ◽  
Self Assembled Monolayers ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Chemical Structures ◽  
Rigid Objects ◽  
Assembled Monolayers ◽  
Stm Images ◽  
Insight Into

Self-assembled monolayers of a molecular spoked wheel (a shape-persistent macrocycle with an intraannular spoke/hub system) and its synthetic precursor are investigated by scanning tunneling microscopy (STM) at the liquid/solid interface of 1-octanoic acid and highly oriented pyrolytic graphite. The submolecularly resolved STM images reveal that the molecules indeed behave as more or less rigid objects of certain sizes and shapes – depending on their chemical structures. In addition, the images provide insight into the multilayer growth of the molecular spoked wheels (MSWs), where the first adlayer acts as a template for the commensurate adsorption of molecules in the second layer.

Scanning Tunneling Microscope Study of Etch Pits on Highly Oriented Pyrolytic Graphite Heated in an Atomic Absorption Electrothermal Analyzer

1997 ◽  
Vol 51 (12) ◽  
pp. 1896-1904 ◽  
Author(s):  
Kurt G. Vandervoort ◽  
Kristin N. McLain ◽  
David J. Butcher
Keyword(s):  
Elevated Temperatures ◽  
Pyrolytic Graphite ◽  
Reaction Rates ◽  
Surface Reactivity ◽  
Scanning Tunneling ◽  
Highly Oriented Pyrolytic Graphite ◽  
Tunneling Microscopy ◽  
Etch Pits ◽  
Pit Formation ◽  
Second Period

Scanning tunneling microscopy (STM) was used to elucidate monolayer etch pits that form on highly oriented pyrolytic graphite (HOPG) heated in an electrothermal analyzer. Pits form at elevated temperatures due to reactions between oxygen and exposed carbon edge atoms (defects) and additionally with intraplanar carbon atoms (through abstraction). Samples of HOPG without analyte or matrix modifier were placed in the depression of a pure pyrolytic graphite platform and heated by using standard analysis furnace programs. Under argon stop-flow conditions, pits form in less than a second at atomization temperatures equal to and above 1200 °C. With low argon flow rates (40 mL/min), pits formed at atomization temperatures equal to and greater than 1750 °C in less than a second. Quantitative pit formation rates were used to indicate oxygen partial pressure, which may be as high as ∼ 10−3 atm at 1200 °C. Reaction rates were used to predict surface degradation due to oxygen attack and determine that 1-μm depth normal to the surface would be removed by 200 successive 5-second-period furnace firings at 1200 °C. Implications for increases in surface reactivity and analyte intercalation are discussed.

Scanning Tunneling Microscopy and Atomic Force Microscopy Investigation of Organic Tetracyanoquinodimethane Thin Films

1997 ◽  
Vol 12 (8) ◽  
pp. 1942-1945 ◽  
Author(s):  
H. J. Gao ◽  
H. X. Zhang ◽  
Z. Q. Xue ◽  
S. J. Pang
Keyword(s):  
Thin Films ◽  
Atomic Force Microscopy ◽  
Scanning Tunneling Microscopy ◽  
Pyrolytic Graphite ◽  
Film Surface ◽  
Scanning Tunneling ◽  
Tunneling Microscopy ◽  
Force Microscopy ◽  
Atomic Force ◽  
Microscopy Investigation

Scanning tunneling microscopy (STM) and atomic force microscopy (AFM) investigation of tetracyanoquinodimethane (TCNQ) and the related C60-TCNQ thin films is presented. Periodic molecular chains of the TCNQ on highly oriented pyrolytic graphite (HOPG) substrates were imaged, which demonstrated that the crystalline (001) plane was parallel to the substrate. For the C60-TCNQ thin films, we found that there were grains on the film surface. STM images within the grain revealed that the well-ordered rows and terraces, and the parallel rows in different grains were generally not in the same orientation. Moreover, the grain boundary was also observed. In addition, AFM was employed to modify the organic TCNQ film surface for the application of this type of materials to information recording and storage at the nanometer scale. The nanometer holes were successfully created on the TCNQ thin film by the AFM.

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