Principal elementary mode analysis (PEMA)

Principal elementary mode analysis (PEMA), provides an easy way to identify metabolic patterns in large fluxomics datasets in terms of the simplest pathways of the organism metabolism

Identification of active pathways of Chlorella protothecoides by elementary mode analysis integrated with fluxomic data

Algal Research ◽

10.1016/j.algal.2019.101767 ◽

2020 ◽

Vol 45 ◽

pp. 101767

Author(s):

Lujing Ren ◽

Xiaoman Sun ◽

Lihui Zhang ◽

Quanyu Zhao ◽

He Huang

Keyword(s):

Chlorella Protothecoides ◽

Mode Analysis ◽

Elementary Mode ◽

Identifying target processes for microbial electrosynthesis by elementary mode analysis

BMC Bioinformatics ◽

10.1186/s12859-014-0410-2 ◽

2014 ◽

Vol 15 (1) ◽

Cited By ~ 49

Author(s):

Frauke Kracke ◽

Jens O Krömer

Keyword(s):

Mode Analysis ◽

Elementary Mode ◽

Microbial Electrosynthesis ◽

Quantification of metabolism in Saccharomyces cerevisiae under hyperosmotic conditions using elementary mode analysis

Journal of Industrial Microbiology & Biotechnology ◽

10.1007/s10295-012-1090-4 ◽

2012 ◽

Vol 39 (6) ◽

pp. 927-941 ◽

Cited By ~ 2

Author(s):

Jignesh H. Parmar ◽

Sharad Bhartiya ◽

K. V. Venkatesh

Keyword(s):

Saccharomyces Cerevisiae ◽

Mode Analysis ◽

Elementary Mode ◽

Designing optimal cell factories: integer programming couples elementary mode analysis with regulation

BMC Systems Biology ◽

10.1186/1752-0509-6-103 ◽

2012 ◽

Vol 6 (1) ◽

pp. 103 ◽

Cited By ~ 22

Author(s):

Christian Jungreuthmayer ◽

Jürgen Zanghellini

Keyword(s):

Integer Programming ◽

Mode Analysis ◽

Elementary Mode ◽

Cell Factories

Drug target prediction using elementary mode analysis in Ascaris lumbricoides energy metabolism

Biotechnology and Bioprocess Engineering ◽

10.1007/s12257-012-0390-x ◽

2013 ◽

Vol 18 (3) ◽

pp. 491-500 ◽

Cited By ~ 6

Author(s):

K. Parvatham ◽

L. Veerakumari

Keyword(s):

Energy Metabolism ◽

Ascaris Lumbricoides ◽

Drug Target ◽

Target Prediction ◽

Mode Analysis ◽

Elementary Mode ◽

Drug Target Prediction

Integration of enzyme activities into metabolic flux distributions by elementary mode analysis

BMC Systems Biology ◽

10.1186/1752-0509-1-31 ◽

2007 ◽

Vol 1 (1) ◽

Cited By ~ 22

Author(s):

Hiroyuki Kurata ◽

Quanyu Zhao ◽

Ryuichi Okuda ◽

Kazuyuki Shimizu

Keyword(s):

Enzyme Activities ◽

Metabolic Flux ◽

Mode Analysis ◽

Elementary Mode ◽

Elementary mode analysis and metabolic flux analysis of L-glutamate biosynthesis byCorynebacterium glutamicum

Annals of Microbiology ◽

10.1007/bf03178334 ◽

2009 ◽

Vol 59 (2) ◽

pp. 317-322 ◽

Cited By ~ 10

Author(s):

Ning Chen ◽

Jun Du ◽

Hui Liu ◽

Qingyang Xu

Keyword(s):

Metabolic Flux Analysis ◽

Metabolic Flux ◽

Mode Analysis ◽

Flux Analysis ◽

Elementary Mode ◽

Glutamate Biosynthesis

Elementary Mode Analysis: A Useful Metabolic Pathway Analysis Tool for Reprograming Microbial Metabolic Pathways

Subcellular Biochemistry - Reprogramming Microbial Metabolic Pathways ◽

10.1007/978-94-007-5055-5_2 ◽

2012 ◽

pp. 21-42 ◽

Cited By ~ 7

Author(s):

Cong T. Trinh ◽

R. Adam Thompson

Keyword(s):

Pathway Analysis ◽

Metabolic Pathway ◽

Metabolic Pathways ◽

Mode Analysis ◽

Analysis Tool ◽

Elementary Mode ◽

Metabolic Pathway Analysis ◽

Pathway Analysis Tool

Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1

Biosystems ◽

10.1016/j.biosystems.2011.10.003 ◽

2012 ◽

Vol 107 (2) ◽

pp. 120-128 ◽

Cited By ~ 24

Author(s):

C.M. Flynn ◽

K.A. Hunt ◽

J.A. Gralnick ◽

F. Srienc

Keyword(s):

Shewanella Oneidensis ◽

Metabolic Model ◽

Mode Analysis ◽

Elementary Mode ◽

Dynamic Modeling of CHO Cell Metabolism Using the Hybrid Cybernetic Approach With a Novel Elementary Mode Analysis Strategy

Frontiers in Bioengineering and Biotechnology ◽

10.3389/fbioe.2020.00279 ◽

2020 ◽

Vol 8 ◽

Cited By ~ 2

Author(s):

Juan A. Martínez ◽

Dubhe B. Bulté ◽

Martha A. Contreras ◽

Laura A. Palomares ◽

Octavio T. Ramírez

Keyword(s):

Dynamic Modeling ◽

Cell Metabolism ◽

Mode Analysis ◽

Cho Cell ◽

Elementary Mode ◽

Analysis Strategy