Unravelling hydrogen bonding interactions of tryptamine–water dimer from neutral to cation

2017 ◽  
Vol 19 (37) ◽  
pp. 25260-25269 ◽  
Author(s):  
Zongyuan Liu ◽  
Carl O. Trindle ◽  
Quanli Gu ◽  
Wei Wu ◽  
Peifeng Su
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Water Dimer ◽  
Physical Origin ◽  
Intermolecular Hydrogen Bonds ◽  
Hydrogen Bonding Interactions

The physical origin for the three intermolecular hydrogen bonds in the neutral and cationic forms of the tryptamine–water dimer is explored.

scholarly journals Crystal structure ofcatena-poly[[[triaquastrontium]-di-μ2-glycinato] dibromide]

2015 ◽  
Vol 71 (7) ◽  
pp. 875-878 ◽  
Author(s):  
Palanisamy Revathi ◽  
Thangavelu Balakrishnan ◽  
Kandasamy Ramamurthi ◽  
Subbiah Thamotharan
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Alkaline Earth ◽  
Three Dimensional ◽  
Water Molecules ◽  
Intermolecular Hydrogen Bonds ◽  
Rotation Axes ◽  
Hydrogen Bonding Interactions ◽  
Carboxylate Groups ◽  
Glycine Molecule

In the title coordination polymer, {[Sr(C2H5NO2)2(H2O)3]Br2}n, the Sr2+ion and one of the water molecules are located on twofold rotation axes. The alkaline earth ion is nine-coordinated by three water O atoms and six O atoms of the carboxylate groups of four glycine ligands, two in a chelating mode and two in a monodentate mode. The glycine molecule exists in a zwitterionic form and bridges the cations into chains parallel to [001]. The Br−counter-anions are located between the chains. Intermolecular hydrogen bonds are formed between the amino and carboxylate groups of neighbouring glycine ligands, generating a head-to-tail sequence. Adjacent head-to-tail sequences are further interconnected by intermolecular N—H...Br hydrogen-bonding interactions into sheets parallel to (100). O—H...Br and O—H...O hydrogen bonds involving the coordinating water molecules are also present, consolidating the three-dimensional hydrogen-bonding network.

scholarly journals Tuning the Wettability and Surface Free Energy of Poly(vinylphenol) Thin Films by Modulating Hydrogen-Bonding Interactions

Polymers ◽  
2020 ◽  
Vol 12 (3) ◽  
pp. 523 ◽  
Author(s):  
Chih-Feng Wang ◽  
Dula Daksa Ejeta ◽  
Jian-Yi Wu ◽  
Shiao-Wei Kuo ◽  
Ching-Hsuan Lin ◽  
...  
Keyword(s):  
Thin Films ◽  
Free Energy ◽  
Hydrogen Bonding ◽  
Thermal Treatment ◽  
Hydrogen Bonds ◽  
Surface Free Energy ◽  
Intermolecular Hydrogen Bonding ◽  
Intermolecular Hydrogen Bonds ◽  
Hydrogen Bonding Interactions ◽  
Effective Manner

The ability to tune the surface properties of a polymer film in a simple and effective manner is important for diverse biological, industrial, and environmental applications. In this work, we investigated whether or not the surface free energy of poly(vinyl phenol; PVPh) can be tuned by adjusting the casting solvent and the thermal treatment time, which alters the proportions of intra-and intermolecular hydrogen bonding interactions. Compared to the untreated sample, in tetrahydrofuran (THF) system, the thermal treatment resulted in a lower proportion of intermolecular hydrogen bonds and a concomitant decrease in the surface free energy (from 39.3 to 18.8 mJ/m2). In contrast, the thermal treatment in propylene glycol methyl ether acetate (PGMEA) and ethyl-3-ethoxypropionate (EEP) systems increased the proportion of intermolecular hydrogen bonds and the surface free energy of the polymer thin films, from 45.0 to 54.3 mJ/m2 for PGMEA and from 45.5 to 52.9 mJ/m2 for EEP. Controlling intermolecular hydrogen-bonding interactions is a unique and easy method for tuning the surface free energies of polymer substances.

Malabaricone A isolated from a methanol extract of Myristica malabarica

2006 ◽  
Vol 62 (4) ◽  
pp. o1338-o1339 ◽  
Author(s):  
A. K. Bauri ◽  
Sabine Foro ◽  
Hans J. Lindner ◽  
S. K. Nayak
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Title Compound ◽  
Methanol Extract ◽  
Alkyl Chain ◽  
Zigzag Chain ◽  
Intermolecular Hydrogen Bonds ◽  
Hydrogen Bonding Interactions ◽  
Benzene Rings

The title compound, malabaricone A [systematic name: 1-(2,6-dihydroxyphenyl)-9-phenylnonan-1-one], C21H26O3, contains two benzene rings linked through a C9 alkyl chain. Both intra- and intermolecular O—H...O hydrogen-bonding interactions stabilize the packing. The intermolecular hydrogen bonds result in the formation of an infinite zigzag chain.

scholarly journals Crystal structures of [Cu(phen)(H2O)3(MF6)]·H2O (M = Ti, Zr, Hf) and [Cu(phen)(H2O)2F]2[HfF6]·H2O

2021 ◽  
Vol 77 (2) ◽  
pp. 165-170
Author(s):  
Matthew L. Nisbet ◽  
Kenneth R. Poeppelmeier
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Intermolecular Hydrogen Bonding ◽  
Intermolecular Hydrogen Bonds ◽  
Early Transition Metal ◽  
Hydrogen Bonding Interactions ◽  
Bimetallic Compounds ◽  
Molecular Compounds ◽  
Molecular Salt

The crystal structures of three bridged bimetallic molecular compounds, namely, triaqua-2κ3 O-μ-fluorido-pentafluorido-1κ5 F-(1,10-phenanthroline-2κ2 N,N′)copper(II)titanium(IV) monohydrate, [Cu(TiF6)(phen)(H2O)3]·H2O (phen is 1,10-phenanthroline, C12H8N2), (I), triaqua-2κ3 O-μ-fluorido-pentafluorido-1κ5 F-(1,10-phenanthroline-2κ2 N,N′)copper(II)zirconium(IV) monohydrate, [Cu(ZrF6)(phen)(H2O)3]·H2O, (II), and triaqua-2κ3 O-μ-fluorido-pentafluorido-1κ5 F-(1,10-phenanthroline-2κ2 N,N′)copper(II)hafnium(IV) monohydrate, [Cu(HfF6)(phen)(H2O)3]·H2O, (III), and one molecular salt, bis[diaquafluorido(1,10-phenanthroline-κ2 N,N′)copper(II)] hexafluoridohafnate(IV) dihydrate, [CuF(phen)(H2O)2]2[HfF6]·2H2O, (IV), are reported. The bridged bimetallic compounds adopt Λ-shaped configurations, with the octahedrally coordinated copper(II) center linked to the fluorinated early transition metal via a fluoride linkage. The extended structures of these Λ-shaped compounds are organized through both intra- and intermolecular hydrogen bonds and intermolecular π–π stacking. The salt compound [Cu(phen)(H2O)2F]2[HfF6]·H2O displays an isolated square-pyramidal Cu(phen)(H2O)2F+ complex linked to other cationic complexes and isolated HfF6 2− anions through intermolecular hydrogen-bonding interactions.

scholarly journals 1,4a,7-Trimethyl-7-vinyl-1,2,3,4,4a,4b,5,6,7,8,10,10a-dodecahydrophenanthrene-1-carboxylic acid

2009 ◽  
Vol 65 (6) ◽  
pp. o1429-o1429
Author(s):  
Zhen-Dong Zhao ◽  
Yu-Xiang Chen ◽  
Yu-Min Wang ◽  
Liang-Wu Bi
Keyword(s):  
Hydrogen Bonding ◽  
Carboxylic Acid ◽  
Hydrogen Bonds ◽  
Title Compound ◽  
Molecular Conformation ◽  
Slash Pine ◽  
Carboxyl Groups ◽  
Isopimaric Acid ◽  
Hydrogen Bonding Interactions ◽  
Cyclohexene Ring

The title compound, also known as isopimaric acid, C20H30O2, was isolated from slash pine rosin. There are two unique molecules in the unit cell. The two cyclohexane rings have classical chair conformations. The cyclohexene ring represents a semi-chair. The molecular conformation is stabilized by weak intramolecular C—H...O hydrogen-bonding interactions. The molecules are dimerized through their carboxyl groups by O—H...O hydrogen bonds, formingR22(8) rings.

scholarly journals Crystal Structures of Four Novel Thiophene/Phenyl-piperidine Hybrid Chalcones

2014 ◽  
Vol 70 (a1) ◽  
pp. C1020-C1020
Author(s):  
Masood Parvez ◽  
Muhammad Bakhtiar ◽  
Muhammad Baqir ◽  
Muhammad Zia-ur-Rehman
Keyword(s):  
Hydrogen Bonding ◽  
Pharmaceutical Industry ◽  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Benzene Ring ◽  
Drug Targets ◽  
Important Class ◽  
Hydrogen Bonding Interactions ◽  
Benzene Rings ◽  
Type C

Chalcones constitute an important class of bioactive drug targets in the pharmaceutical industry that includes anti-ulcerative drug sofalcone. In continuation of our work, the crystal structures of four closely related 1-phenyl-piperidine based chalcones will be presented. I: C19 H21NOS, MW = 311.43, T = 173(2) K, λ = 0.71073 Å, Orthorhombic, P b c a, a = 10.1045(4), b = 10.5358(4), c = 30.6337(12) Å, V = 3261.2(2) Å3, Z = 8, Dc = 1.269 Mg/m3, F (000) = 1328, R [I>2σ(I)] = 0.059. II: C18H19NOS, MW = 297.40, T = 173(2) K, λ = 1.54178 Å, Orthorhombic, P b c a, a = 8.9236(2), b = 11.0227(2), c = 30.8168(6) Å, V = 3031.21(11) Å3 Z = 8, Dc = 1.303 Mg/m3, F (000) = 1264, R [I>2σ(I)] = 0.035. III: C18H19NOS, MW = 297.40, T = 173(2) K, λ = 1.54178 Å, Orthorhombic, P b c a, a = 8.82990(10), b = 11.0061(2), c = 31.2106(5) Å, V = 3033.13(8) Å3, Z = 8, Dc = 1.303 Mg/m3, F (000) = 1264, R [I>2σ(I)] = 0.048. IV: C18H18ClNOS, MW = 331.84, T = 173(2) K, λ = 0.71073 Å, Monoclinic, P 21/c, a = 14.1037(4), b = 11.3153(3), c = 10.1290(2) Å, β = 101.1367(14)0, V = 1586.02(7) Å3, Z = 4, Dc = 1.390 Mg/m3, F (000) = 696, R [I>2σ(I)] = 0.038. The crystals of I, II and III are isomorphous. In all structures, the piperidine rings are in chair conformations, thiophene rings are essentially planar and the C=C bonds in the prop-2-en-1-one fragment adopt E-conformation. All crystal structures are devoid of any classical hydrogen bonds. However, non-classical hydrogen bonding interactions of the type C---H...O in compounds II, III and IV link the molecules into chains extended along the b-axis. Moreover, C---H...Cg interactions involving thiophene rings in I and III and benzene ring in IV and π...π interactions between benzene rings lying about inversion centers are present in II and III.

Improved stability of a metallic state in benzothienobenzothiophene-based molecular conductors: an effective increase of dimensionality with hydrogen bonds

2017 ◽  
Vol 53 (24) ◽  
pp. 3426-3429 ◽  
Author(s):  
Toshiki Higashino ◽  
Akira Ueda ◽  
Junya Yoshida ◽  
Hatsumi Mori
Keyword(s):  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Metallic State ◽  
Molecular Conductors ◽  
Hydrogen Bonding Interactions ◽  
Molecular Conductor ◽  
Improved Stability

Stabilization of a metallic state was successfully achieved by applying hydrogen-bonding interactions in a novel benzothienobenzothiophene-based molecular conductor.

A Comparison of the Enamino Carbonyl Conjugation Efficiency for Hydrogen Bonding Formation in Pyridone and Dihydropyridone Systems

2000 ◽  
Vol 55 (1) ◽  
pp. 5-11 ◽  
Author(s):  
Teresa Borowiak ◽  
Irena Wolska ◽  
Artur Korzański ◽  
Wolfgang Milius ◽  
Wolfgang Schnick ◽  
...  
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Crystal Structures ◽  
Steric Hindrance ◽  
Crystal Packing ◽  
Intermolecular Hydrogen Bond ◽  
Asymmetric Unit ◽  
Intermolecular Hydrogen Bonds

The crystal structures of two compounds containing enaminone heterodiene systems and forming intermolecular hydrogen bonds N-H·O are reported: 1) 3-ethoxycarbonyl-2-methyl-4-pyridone (hereafter ETPY) and 2) 3-ethoxycarbonyl-2-phenyl-6-methoxycarbonyl-5,6-di-hydro-4-pyridone (hereafter EPPY). The crystal packing is controlled by intermolecular hydro­ gen bonds N-H·O = C connecting the heteroconjugated enaminone groups in infinite chains. In ETPY crystals the intermolecular hydrogen bond involves the heterodienic pathway with the highest π-delocalization that is effective for a very short N·O distance of 2.701(9) Å (average from two molecules in the asymmetric unit). Probably due to the steric hindrance, the hydrogen bond in EPPY is formed following the heterodienic pathway that involves the ester C = O group, although π-delocalization along this pathway is less than that along the pyridone-part pathway resulting in a longer N·O distance of 2.886(3) Å

Correspondence: Hydrogen Bond to Gold? 1H NMR is Not a Proof of Hydrogen Bonds in Transition Metal Complexes

2018 ◽  
Author(s):  
Jan Vícha ◽  
Cina Foroutan-Nejad ◽  
Michal Straka
Keyword(s):  
Hydrogen Bond ◽  
Hydrogen Bonding ◽  
Hydrogen Bonds ◽  
Chemical Shifts ◽  
X Ray ◽  
Structure And Dynamics ◽  
Hydrogen Bonding Interactions ◽  
Overall Stability ◽  
Gold Compounds ◽  
C Nmr

Illusive Au<sup>I/III</sup>···H hydrogen bonds and their effect on structure and dynamics of molecules have been a matter of debate. While a number of X-ray studies reported gold compounds with short Au<sup>I/III</sup>···H contacts, a solid spectroscopic evidence for Au<sup>I/III</sup>···H bonding has been missing. Recently<a></a><a>, Bakar <i>et al.</i></a> (NATURE COMMUNICATIONS 8:576) reported compound with four short Au···H contacts (2.61­–2.66 Å; X-ray determined). Assuming the central cluster be [Au<sub>6</sub>]<sup>2+</sup>and observing the <sup>1</sup>H (<sup>13</sup>C) NMR resonances at relevant H(C) nuclei deshielded with respect to precursor compound, the authors concluded with reservations that <i>“the present Au···H–C interaction is a kind of “hydrogen bond”, where the [Au<sub>6</sub>]<sup>2+</sup>serves as an acceptor”</i>. Here, we show that the Au<sub>6</sub>cluster in their compound bears negative charge and the Au···H contacts lead to a weak (~1 kcal/mol) auride···hydrogen bonding interactions, though unimportant for the overall stability of<b></b>the molecule. Additionally, computational analysis of NMR chemical shifts reveals that the deshielding effects at respective hydrogen nuclei are not directly related to Au···H–C hydrogen bonding .

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