scholarly journals THE ROLE OF MOLYBDENUM IN NITRATE ASSIMILATION BY AGROBACTERIUM TUMEFACIENS

1963 ◽  
Vol 88 (2) ◽  
pp. 239-242 ◽  
Author(s):  
CK RAMAKRISHNAKURUP ◽  
CS VAIDYANATHAN
1998 ◽  
Vol 18 (3) ◽  
pp. 1339-1348 ◽  
Author(s):  
Joseph Strauss ◽  
M. Isabel Muro-Pastor ◽  
Claudio Scazzocchio

ABSTRACT The regulation of nitrate assimilation seems to follow the same pattern in all ascomycetes where this process has been studied. We show here by in vitro binding studies and a number of protection and interference techniques that the transcription factor mediating nitrate induction in Aspergillus nidulans, a protein containing a binuclear zinc cluster DNA binding domain, recognizes an asymmetrical sequence of the form CTCCGHGG. We further show that the protein binds to its consensus site as a dimer. We establish the role of the putative dimerization element by its ability to replace the analogous element of the cI protein of phage λ. Mutagenesis of crucial leucines of the dimerization element affect both the binding ability of the dimer and the conformation of the resulting protein-DNA complex. This is the first case to be described where a dimer recognizes such an asymmetrical nonrepeated sequence, presumably by each monomeric subunit making different contacts with different DNA half-sites.


2015 ◽  
Vol 11 (2) ◽  
pp. 491-499 ◽  
Author(s):  
Sok Ho Kim ◽  
Yi Wang ◽  
Maxim Khomutov ◽  
Alexey Khomutov ◽  
Clay Fuqua ◽  
...  

2016 ◽  
Vol 82 (12) ◽  
pp. 3471-3480 ◽  
Author(s):  
Yoon-Suk Kang ◽  
Keenan Brame ◽  
Jonathan Jetter ◽  
Brian B. Bothner ◽  
Gejiao Wang ◽  
...  

ABSTRACTArsR is a well-studied transcriptional repressor that regulates microbe-arsenic interactions. Most microorganisms have anarsRgene, but in cases where multiple copies exist, the respective roles or potential functional overlap have not been explored. We examined the repressors encoded byarsR1andarsR2(ars1operon) and byarsR3andarsR4(ars2operon) inAgrobacterium tumefaciens5A. ArsR1 and ArsR4 are very similar in their primary sequences and diverge phylogenetically from ArsR2 and ArsR3, which are also quite similar to one another. Reporter constructs (lacZ) forarsR1,arsR2, andarsR4were all inducible by As(III), but expression ofarsR3(monitored by reverse transcriptase PCR) was not influenced by As(III) and appeared to be linked transcriptionally to an upstreamlysR-type gene. Experiments using a combination of deletion mutations and additional reporter assays illustrated that the encoded repressors (i) are not all autoregulatory as is typically known for ArsR proteins, (ii) exhibit variable control of each other's encoding genes, and (iii) exert variable control of other genes previously shown to be under the control of ArsR1. Furthermore, ArsR2, ArsR3, and ArsR4 appear to have an activator-like function for some genes otherwise repressed by ArsR1, which deviates from the well-studied repressor role of ArsR proteins. The differential regulatory activities suggest a complex regulatory network not previously observed in ArsR studies. The results indicate that fine-scale ArsR sequence deviations of the reiterated regulatory proteins apparently translate to different regulatory roles.IMPORTANCEGiven the significance of the ArsR repressor in regulating various aspects of microbe-arsenic interactions, it is important to assess potential regulatory overlap and/or interference when a microorganism carries multiple copies ofarsR. This study explores this issue and shows that the fourarsRgenes inA. tumefaciens5A, associated with two separatearsoperons, encode proteins exhibiting various degrees of functional overlap with respect to autoregulation and cross-regulation, as well as control of other functional genes. In some cases, differences in regulatory activity are associated with only limited differences in protein primary structure. The experiments summarized herein also present evidence that ArsR proteins appear to have activator functions, representing novel regulatory activities for ArsR, previously known only to be a repressor.


2002 ◽  
Vol 184 (1) ◽  
pp. 327-330 ◽  
Author(s):  
Erh-Min Lai ◽  
Ralf Eisenbrandt ◽  
Markus Kalkum ◽  
Erich Lanka ◽  
Clarence I. Kado

ABSTRACT VirB2 propilin is processed by the removal of a 47-amino-acid signal peptide to generate a 74-amino-acid peptide product in both Escherichia coli and Agrobacterium tumefaciens. The cleaved VirB2 protein is further cyclized to form the T pilin in A. tumefaciens but not in E. coli. Mutations in the signal peptidase cleavage sequence of VirB2 propilin cause the formation of aberrant T pilin and also severely attenuate virulence. No T pilus was observed in these mutants. The potential role of the exact VirB2 propilin cleavage and cyclization in T pilus biogenesis and virulence is discussed.


2011 ◽  
Vol 39 (6) ◽  
pp. 1838-1843 ◽  
Author(s):  
Víctor M. Luque-Almagro ◽  
Andrew J. Gates ◽  
Conrado Moreno-Vivián ◽  
Stuart J. Ferguson ◽  
David J. Richardson ◽  
...  

In the context of the global nitrogen cycle, the importance of inorganic nitrate for the nutrition and growth of marine and freshwater autotrophic phytoplankton has long been recognized. In contrast, the utilization of nitrate by heterotrophic bacteria has historically received less attention because the primary role of these organisms has classically been considered to be the decomposition and mineralization of dissolved and particulate organic nitrogen. In the pre-genome sequence era, it was known that some, but not all, heterotrophic bacteria were capable of growth on nitrate as a sole nitrogen source. However, examination of currently available prokaryotic genome sequences suggests that assimilatory nitrate reductase (Nas) systems are widespread phylogenetically in bacterial and archaeal heterotrophs. Until now, regulation of nitrate assimilation has been mainly studied in cyanobacteria. In contrast, in heterotrophic bacterial strains, the study of nitrate assimilation regulation has been limited to Rhodobacter capsulatus, Klebsiella oxytoca, Azotobacter vinelandii and Bacillus subtilis. In Gram-negative bacteria, the nas genes are subjected to dual control: ammonia repression by the general nitrogen regulatory (Ntr) system and specific nitrate or nitrite induction. The Ntr system is widely distributed in bacteria, whereas the nitrate/nitrite-specific control is variable depending on the organism.


1968 ◽  
Vol 43 (5) ◽  
pp. 775-780 ◽  
Author(s):  
Gary M. Paulsen ◽  
James E. Harper

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