scholarly journals Synthesis of haem cytochrome c prosthetic group from δ-aminolaevulinate by the cell sap from rat liver

1977 ◽  
Vol 166 (3) ◽  
pp. 305-313 ◽  
Author(s):  
Carmen Sáez De Córdova ◽  
Regina Cohén ◽  
Néstor F. González-Cadavid
Keyword(s):  
Cytochrome C ◽  
Rat Liver ◽  
Paper Chromatography ◽  
Protoporphyrin Ix ◽  
Soluble Form ◽  
Prosthetic Group ◽  
Small Pool ◽  
Complete Set ◽  
Covalently Linked

To determine whether the prosthetic group of cytochrome c is synthesized and linked to the apoprotein in the cytosol or in connexion with the endoplasmic reticulum, we have studied the incorporation in vitro of δ-amino[14C]laevulinate into porphyrin compounds and cytochrome c by the cell sap from rat liver. The radioactive precursor was incorporated into a trichloroacetic acid-precipitable form partially resistant to extractions by acid solvents, suggesting the existence of a fraction covalently linked to protein. The activity was proportional to the amount of protein incubated, did not increase substantially by supplementation with the microsomal fraction and an energy source, and was very low in the pH5 fraction. Addition of increasing amounts of haemin inhibited the incorporation, as with purified δ-aminolaevulinate dehydratase. [14C]Protoporphyrin IX was identified by paper chromatography, together with a shoulder running as protohaem IX. The cell sap in the absence of ribosomes was also able to incorporate radioactivity into purified cytochrome c, and the addition of ribosomes significantly enhanced the activity. The precursors of haem c were synthesized in the soluble system by the known haem-synthetic pathway, as shown by the kinetics of labelling of the coproporphyrin, protoporphyrin and haem fractions, and the activities were concentrated in the precipitate obtained between 40 and 60% saturation with (NH4)2SO4. The presence of ferrochelatase was indicated by the incorporation of55Fe into proto- and haemato-haem identified by paper chromatography. It is concluded that the cell sap from rat liver contains the complete set of enzymes for the synthesis from δ-aminolaevulinate of haem c and its linkage to a small pool of free apoprotein c present in soluble form. This suggests that an ancillary pathway of haem synthesis occurs in the cytosol for at least the formation of the prosthetic group, which is linked post-translationally to that pool of apoprotein c synthesized by free polyribosomes.

A comprehensive in silico study towards understanding the inhibitory mechanism of Lactoperoxidase by Dapsone and Propofol

2020 ◽  
Vol 16 ◽  
Author(s):  
Rameez Jabeer Khan ◽  
Rajat Kumar Jha ◽  
Gizachew Muluneh Amera ◽  
Jayaraman Muthukumaran ◽  
Rashmi Prabha Singh ◽  
...  
Keyword(s):  
Molecular Docking ◽  
Md Simulation ◽  
Binding Free Energy ◽  
Protoporphyrin Ix ◽  
Md Simulations ◽  
Prosthetic Group ◽  
Drug Molecules ◽  
Group A ◽  
Complex Forms ◽  
Covalently Linked

Introduction: Lactoperoxidase (LPO) is a member of mammalian heme peroxidase family and is an enzyme of innate immune system. It possesses a covalently linked heme prosthetic group (a derivative of protoporphyrin IX) in its active site. LPO catalyzes the oxidation of halides and pseudohalides in the presence of hydrogen peroxide (H2O2) and shows a broad range of antimicrobial activity. Methods: In this study, we have used two pharmaceutically important drug molecules, namely dapsone and propofol, which are earlier reported as potent inhibitors of LPO. Whereas the stereochemistry and mode of binding of dapsone and propofol to LPO is still not known because of the lack of the crystal structure of LPO with these two drugs. In order to fill this gap, we utilized molecular docking and molecular dynamics (MD) simulation studies of LPO in native and complex forms with dapsone and propofol. Results: From the docking results, the estimated binding free energy (ΔG) of -9.25 kcal/mol (Ki = 0.16 μM) and -7.05 kcal/mol (Ki = 6.79 μM) was observed for dapsone, and propofol, respectively. The standard error of Auto Dock program is 2.5 kcal/mol; therefore, molecular docking results alone were inconclusive. Conclusion: To further validate the docking results, we performed MD simulation on unbound, and two drugs bounded LPO structures. Interestingly, MD simulations results explained that the structural stability of LPO-Propofol complex was higher than LPO-Dapsone complex. The results obtained from this study establish the mode of binding and interaction pattern of the dapsone and propofol to LPO as inhibitors.

Photooxygenation in polymer matrices: En route to highly active antimalarial peroxides

2005 ◽  
Vol 77 (6) ◽  
pp. 1059-1074 ◽  
Author(s):  
Axel G. Griesbeck ◽  
Tamer T. El-Idreesy ◽  
Anna Bartoschek
Keyword(s):  
Singlet Oxygen ◽  
Protoporphyrin Ix ◽  
Polymer Matrices ◽  
Allylic Alcohols ◽  
Ene Reaction ◽  
Highly Active ◽  
Determining Factors ◽  
Broad Variety ◽  
Covalently Linked

Photooxygenation involving the first excited singlet state of molecular oxygen is a versatile method for the generation of a multitude of oxy-functionalized target molecules often with high regio- and stereoselectivities. The efficiency of singlet-oxygen reactions is largely dependent on the nonradiative deactivation paths, mainly induced by the solvent and the substrate intrinsically. The intrinsic (physical) quenching properties as well as the selectivity-determining factors of the (chemical) quenching can be modified by adjusting the microenvironment of the reactive substrate. Tetraarylporphyrins or protoporphyrin IX were embedded in polystyrene (PS) beads and in polymer films or covalently linked into PS during emulsion polymerization. These polymer matrices are suitable for a broad variety of (solvent-free) photooxygenation reactions. One specific example discussed in detail is the ene reaction of singlet oxygen with chiral allylic alcohols yielding unsaturated β-hydroperoxy alcohols in (threo) diastereoselectivities, which depended on the polarity and hydrogen-bonding capacity of the polymer matrix. These products were applied for the synthesis of mono- and spirobicyclic 1,2,4-trioxanes, molecules that showed moderate to high antimalarial properties. Subsequent structure optimization resulted in in vitro activities that surpassed that of the naturally occurring sesquiterpene-peroxide artemisinin.

Effect of Prolonged Consumption of Pemmican Survival Ration on Some Aspects of the Intermediary Metabolism of Rat Liver Tissue

1958 ◽  
Vol 193 (2) ◽  
pp. 449-454 ◽  
Author(s):  
John P. Hannon ◽  
David A. Vaughan
Keyword(s):  
Cytochrome C ◽  
Respiratory Rate ◽  
Rat Liver ◽  
Liver Tissue ◽  
In Vitro Metabolism ◽  
Intermediary Metabolism ◽  
Normal Value ◽  
Endogenous Metabolism ◽  
Prolonged Feeding

The effect of prolonged feeding (3–5 months) of pemmican on some aspects of the in vitro metabolism of liver tissue was investigated. The endogenous metabolism of liver slices and homogenates was significantly increased by pemmican, probably due to an increase in the amount of readily metabolizable substrate. Utilizing mitochondrial preparations, it was found that with all substrates studied, except glutamate, α-ketoglutarate and succinate, the respiratory rate was not affected by the previous diet in the absence of added cytochrome c and diphosphopyridine nucleotide. The three substrates mentioned were oxidized at significantly lower rates in the pemmican group. Upon the addition of cytochrome c and diphosphopyridine nucleotide the qo2 of glutamate, α-ketoglutarate, and succinate was returned to the normal value.

THE INHIBITION OF OXIDATIVE AND PHOSPHORYLATIVE ENZYMES IN RAT LIVER MITOCHONDRIA BY AMINOAZOBENZENE DERIVATIVES

1960 ◽  
Vol 38 (1) ◽  
pp. 1-11 ◽  
Author(s):  
W. C. McMurray
Keyword(s):  
Cytochrome C ◽  
Rat Liver ◽  
Pyridine Nucleotide ◽  
Liver Mitochondria ◽  
Rat Liver Mitochondria ◽  
Succinate Oxidation ◽  
Metabolic Block ◽  
Liver Carcinogen ◽  
Mitochondrial Dehydrogenase Activity

The liver carcinogen, dimethylaminoazobenzene, inhibited in vitro the oxidation of a variety of pyridine nucleotide linked substrates of rat liver mitochondria without affecting the process of oxidative phosphorylation. Cytochrome c oxidase activity was not inhibited by the carcinogen, nor was the succinoxidase activity, but the phosphorylation accompanying succinate oxidation was uncoupled. Similar effects were noted with other aminoazobenzene derivatives, but did not appear to be correlated with the ability of the compounds to evoke tumors.The site of the respiratory inhibition by dimethylaminoazobenzene appears to be at the level between reduced pyridine nucleotide and cytochrome c in the respiratory chain. Mitochondrial dehydrogenase activity was not inhibited, while the oxidation of reduced diphosphopyridine nucleotide was markedly decreased. The reduction of the electron acceptor, ferricyanide, by pyridine nucleotide linked substrates was also strongly inhibited but the reduction of tetrazolium compounds was not affected. The latter observations suggest that dimethylaminoazobenzene produces a metabolic block between reduced flavin and cytochrome c in the mitochondrial electron transport system.

scholarly journals Role of membrane-bound and free polyribosomes in the synthesis of cytochrome c in rat liver

1974 ◽  
Vol 140 (2) ◽  
pp. 157-167 ◽  
Author(s):  
Néstor F. González-Cadavid ◽  
Carmen Sáez De Córdova
Keyword(s):  
Endoplasmic Reticulum ◽  
Cytochrome C ◽  
Rat Liver ◽  
Cell Structure ◽  
Polyacrylamide Gel Electrophoresis ◽  
Mitochondrial Protein ◽  
Sodium Dodecyl ◽  
Membrane Bound

The functional distinction of membrane-bound and free polyribosomes for the synthesis of exportable and non-exportable proteins respectively is not so strict as was initially thought, and it was therefore decided to investigate their relative contribution to the elaboration of an internal protein integrated into a cell structure. Cytochrome c was chosen as an example of a soluble mitochondrial protein, and the incorporation of [14C]leucine and δ-amino[14C]laevulinate into the molecule was studied by using different ribosomal preparations from regenerating rat liver. A new procedure was devised for the purification of cytochrome c, based on ion-exchange chromatography combined with sodium dodecyl sulphate–polyacrylamide-gel electrophoresis. In spite of cytochrome c being a non-exportable protein, the membrane-bound polyribosomes were at least as active as the free ribosomes in the synthesis in vitro of the apoprotein and the haem moiety. The detergent-treated ribosomes could also effect the synthesis of cytochrome c, although at a lower rate. Since in liver more than two-thirds of the ribosomes are bound to the endoplasmic-reticulum membranes, it is considered that in vivo they are responsible for the synthesis of most of the cytochrome c content of the cell. This suggests that in secretory tissues the endoplasmic reticulum plays a predominant role in mitochondrial biogenesis, although free ribosomes may participate in the partial turnover of some parts of the organelle. The hypothesis on the functional specialization of the different kinds of ribosomes was therefore modified to account for their parallel intervention in the synthesis of proteins associated with membranous structures.

Transfer of Heme from Mitochondria in Rat Liver Cells

1972 ◽  
Vol 50 (6) ◽  
pp. 633-637 ◽  
Author(s):  
B. Yoda ◽  
L. G. Israels
Keyword(s):  
Rat Liver ◽  
Aminolevulinic Acid ◽  
Surrounding Medium ◽  
Protoporphyrin Ix ◽  
Liver Mitochondria ◽  
Rat Liver Mitochondria ◽  
Single Carrier ◽  
Protein Carriers ◽  
Rat Liver Cells

The final steps in heme synthesis take place within mitochondria while the acceptor apoproteins are synthesized on the endoplasmic reticulum. When 14C-δ-aminolevulinic acid is used as a heme precursor in intact rats, measurable 14C-heme is found to be associated with the microsomes within 10 min of intraperitoneal injection. This rapid transfer of heme from mitochondria was studied in vitro using isolated rat liver mitochondria, and protoporphyrin IX and 59Fe as heme precursors. These mitochondria synthesize heme when suspended in whole cell sap and this is only partially reduced by substituting Sephadex G-25 filtered cell sap or sucrose. Mitochondria incubated in G-25 filtered cell sap or sucrose synthesize equivalent amounts of heme but those in sucrose export little heme into the surrounding medium. Heme export from mitochondria is dependent on protein in the suspending medium. In cell sap, heme is associated with multiple proteins and no single carrier was identified. Heme probably makes its way from mitochondria to microsomes via various protein carriers by nonspecific adherence. Microsomal apoproteins or other heme binding proteins then remove the heme from the intermediate carrier as the terminal step.

scholarly journals In VitroStudies on Thioether Bond Formation betweenHydrogenobacter thermophilusApocytochromec552with Metalloprotoporphyrin Derivatives

2004 ◽  
Vol 279 (44) ◽  
pp. 45347-45353 ◽  
Author(s):  
Oliver Daltrop ◽  
Stuart J. Ferguson
Keyword(s):  
Metal Ion ◽  
De Novo ◽  
Bond Formation ◽  
Protoporphyrin Ix ◽  
Prosthetic Group ◽  
Forming Mechanism ◽  
Bond Forming ◽  
Potential Applications ◽  
Cysteine Thiols

Previously,in vitroformation of thioether bonds betweenHydrogenobacter thermophilusapocytochromec552and Fe-protoporphyrin IX has been demonstrated (Daltrop, O., Allen, J. W. A., Willis, A. C., and Ferguson, S. J. (2002)Proc. Natl. Acad. Sci. U. S. A.99, 7872–7876). Now we report studies on the reaction between the metalloderivatives Zn-, Co-, and Mn-protoporphyrin IX and the cysteine thiols ofH. thermophilusapocytochromec552. All of these metalloporphyrins were capable of forminga“b-type cytochrome” state in which the hydrophobic prosthetic group is bound non-covalently. Zn(II)-protoporphyrin IX attached to the polypeptide covalently in the presence of either dithiothreitol or tri(2-carboxyethyl)phosphine to keep the thiol moieties reduced. These data show that the chemical nature of the thiol-reducing agent does not interfere with the thioether bond-forming mechanism. Mn-porphyrin could only react with the protein in the divalent state of the metal ion. Co-porphyrin did not react with the cysteine thiols of the apocytochrome in either oxidation state of the metal. In the absence of a metal (i.e.protoporphyrin IX itself), no reactivity toward apocytochrome is observed. These results have significant implications for the chemical requirements for thioether bond formation of heme vinyl groups to cysteine thiols and also have potential applications inde novodesign of metalloproteins.

scholarly journals Studies of cytochrome synthesis in rat liver

1973 ◽  
Vol 134 (2) ◽  
pp. 377-385 ◽  
Author(s):  
Robert Druyan ◽  
Smilja Jakovcic ◽  
Murray Rabinowitz
Keyword(s):  
Amino Acid ◽  
Cytochrome C ◽  
Rat Liver ◽  
Cytochrome B5 ◽  
Liver Protein ◽  
Protein Synthesis Inhibitors ◽  
Microsomal Cytochrome ◽  
Microsomal Cytochrome B5 ◽  
Parallel Fashion

The incorporation of radioactive amino acids and of δ-amino[2,3-3H2]laevulinate into rat liver cytochromes b5 and c and cytochrome oxidase has been examined with and without protein-synthesis inhibitors. Cycloheximide promptly inhibits labelling of both haem and protein for cytochrome c in parallel fashion. Although incorporation of 14C-labelled amino acid into microsomal cytochrome b5 is also rapidly inhibited, cycloheximide incompletely inhibits haem labelling of cytochrome b5 and cytochrome a+a3, and inhibition occurs only after repeated antibiotic injections. The possibility of apo-protein pools, or of haem exchange, with a rapidly renewed ‘free’ haem pool, is considered. Consistent with this model is the observation of non-enzymic haem exchange in vitro between cytochrome b5 and methaemoglobin. Chloramphenicol, injected intravenously over 5h, results in a 20–40% decrease in incorporation of δ-amino[2,3-3H2]laevulinate into haem a+a3 and haem of cytochromes b5 and c. With the dosage schedule of chloramphenicol studied, amino acid labelling of total liver protein and of cytochrome c was not inhibited. Similarly, ferrochelatase activity was not decreased.

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