scholarly journals Oligomeric tumour necrosis factor α slowly converts into inactive forms at bioactive levels

1992 ◽  
Vol 284 (3) ◽  
pp. 905-910 ◽  
Author(s):  
A Corti ◽  
G Fassina ◽  
F Marcucci ◽  
E Barbanti ◽  
G Cassani

The stability of oligomeric human tumour necrasis factor alpha (TNF) at bioactive levels has been studied by two immunoenzymatic assays: one able to specifically detect oligomeric and not monomeric TNF (O-e.l.i.s.a.) and the other able to detect both forms (OM-e.l.i.s.a.). The selectivity of O-e.l.i.s.a. and OM-e.l.i.s.a. for oligomeric and monomeric TNF was demonstrated with isolated forms prepared by partial dissociation of recombinant TNF with 10% (v/v) dimethyl sulphoxide and gel-filtration h.p.l.c. Evidence for instability of oligomeric TNF were obtained in physiological buffers, as well as in serum and cell-culture supernatants, as a function of TNF concentration. In particular, only a half of the TNF antigen was recovered in the oligomeric form after 72 h incubation (37 degrees C) at 0.12 nM, whereas no apparent dissociation was detected at 4 nM. The structural changes observed at picomolar concentrations were rapidly reversed by raising the concentration of TNF to about 2 nM by ultrafiltration, suggesting that subunit dissociation and reassociation reactions occur in the picomolar and nanomolar range respectively. The cytolytic activity of L-M cells correlates with oligomeric-TNF levels after incubation at picomolar concentrations. Moreover, isolated oligomeric TNF was cytotoxic towards L-M cells, whereas monomeric TNF was virtually inactive. In conclusion, the results suggest that bioactive oligomeric TNF is unstable at picomolar levels and slowly converts into inactive monomers, supporting the hypothesis that quaternary-structure changes in TNF may contribute to the fine regulation of TNF cytotoxicity.

Velella velella is a surface living oceanic chondrophore exhibiting the typical blue pigmentation of the neuston. In the present study the properties of the blue astaxanthinproteins of the mantle tissue are reported. The pigments have been separated into four main fractions by gel filtration (V620, V600, V570 and V545) with λmax 620 nm, 600 nm, 570 nm and 545 nm, respectively, and their molecular sizes were estimated. Pigment V620 is a polymeric form, possibly a tetramer, of pigment V600. Analysis of the gradient elution profile of V600 in gel filtration at low chloride ion concentration provides evidence that the pigment is an octamer of V570-size units. Pigment V570 separates in preparative acrylamide electrophoresis into six components. Gel filtration, SDS-electrophoresis and phase-partition experiments show that these are dimers of apoprotein (V545-size) units of molecular mass ca. 2.3 x 10 4 . Estimates of minimum molecular mass based on astaxanthin content reveal that V620 and V600 have two astaxanthin prosthetic groups per apoprotein subunit. The pigments are simple proteins with free sulphydryl groups and negligible tyrosine contents. Pigments V620 and V600 possess specific anion-binding sites which have an influence on the visible and circular dichroism spectra, and on the quaternary structure of the pigments. In the absence of halide ions the pigments dissociate reversibly forming pigments with λmax 583 nm (V600-size) and λmax 565 nm (V570-size). The aniondependence of the spectra of the native pigments and of the components, V583 and V565, separated in halide-free gel filtration, have been investigated. Equations are derived linking the spectral changes and anion-dependent association processes to the anion concentration. The order of effectiveness of anions for the changes (Br - > I - > Cl - > NO - 3 , CNS - ) does not follow the Hofmeister series. The changes take place at low anion concentrations (10 -5 -10 -1 M) with a negative temperature dependence and are partially abolished by blocking lysine residues; higher anion concentrations are required to bring about alterations in the spectra of the separated components V583 and V565. The halide-dependent quaternary structural changes of the pigments have been followed in gel filtration on Bio-Gel columns equilibrated with phosphate buffer containing low concentrations of KGl. In order to explain the high affinity of the pigments for anions and the order of anion effectiveness, it is proposed that the anion-binding sites consist of clusters of basic residues which impose stereospecific restrictions on the anion binding. These sites are progressively lost in the absence of halide ions and following gel filtration of halide-free solutions of the pigments. 36 Chloride-binding measurements, using a gel filtration equilibrium technique, indicate that V600 may have three such sites per apoprotein subunit. The temperature dependence of chloride binding and of the spectral alterations of the pigment show that occupation of the sites causes relatively minor changes in the polypeptide conformations of the native pigment; surface spreading of the pigment revealed only a small increase in the stability of the tertiary and quaternary structure of the pigment in the presence of chloride ions. Pigment V570 and the apoprotein do not possess halide-ion binding sites of high affinity. The astaxanthin prosthetic groups of pigments V620 and V600 are optically active with large molar ellipticity values in the visible region; pigment V570 shows a low molar ellipticity value at the visible absorption maximum. The origin of the optical activity of the carotenoid in the complexes is discussed. Exciton splitting, attributed to carotenoid-carotenoid interaction, is observed in the circular dichroism (c.d.) spectrum of V620 but only in the presence of halide ions. It is suggested that occupation of the anion-binding sites of the pigment affects the relative orientation or distance apart of the chromophores. A comparison of the c.d. spectrum of the pigments in the far ultraviolet did not reveal any major alteration in protein conformation resulting from anion binding. The c.d. spectrum of V600 in the far ultraviolet and the amino acid composition of the pigment are consistent with a high contribution of β-structure to the configuration of the protein. Investigations into the specificity of carotenoid attachment have shown that although astaxanthin combines most efficiently with the apoprotein, other carotenoids, including acetylenic and cyclopentene derivatives, are able to effect quaternary structural changes of the protein. The carotenoid effects dimerization of the apoprotein in the presence of a 4-keto group in one ring and the presence in either ring of an additional hydrophilic substituent; dimerization of the apoprotein is also obtained with the half-carotenoid, 15-15'-dehydro-8'-apo-β-carotene-8'-al-3,4-dione. Both 4- and 4'-keto groups and additional hydrophilic substituents in the carotenoid structure are prerequisites for the further polymerization of the protein. Garotenoproteins showing chloride-dependent spectral shifts are obtained only with carotenoids containing a keto substituent in both rings.


2002 ◽  
Vol 83 (1) ◽  
pp. 131-139 ◽  
Author(s):  
Ana Grande ◽  
Celina Costas ◽  
Javier Benavente

Previous work has shown that the avian reovirus cell-attachment sigma C (σC) protein is a multimer. In the first part of this study the oligomerization state of intracellularly synthesized σC was analysed by different approaches, including SDS–PAGE, chemical cross-linking, sedimentation and gel filtration analysis. All these approaches indicated that protein σC in its native state is a homotrimer. In the second part of the present work we investigated the effect of different factors and reagents on oligomer stability, in order to elucidate the nature of the forces that maintain the conformational stability of the homotrimer. Our results, based on the stabilizing effect conferred by reducing agents, demonstrate that the σC subunits are not covalently bound via disulfide linkages. They further suggest that the formation of an intrachain disulfide bond between the two cysteine residues of the σC polypeptide has a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding. Finally, our results also reveal that mammalian and avian reovirus cell attachment proteins follow different subunit dissociation pathways.


2020 ◽  
Vol 0 (0) ◽  
Author(s):  
Diego Fernando Roa Acosta ◽  
José Fernando Solanilla Duque ◽  
Lina Marcela Agudelo Laverde ◽  
Héctor Samuel Villada Castillo ◽  
Marcela Patricia Tolaba

AbstractIn this study, amaranth starch was extracted by high-impact wet milling and its structural and thermal properties and the effect of NaOH and SDS concentrations on extraction yield were evaluated. The best condition was 55 g of starch/100 g of amaranth, with a decrease from 2.5 to 3.5 kJ/g using different milling energies. The decrease in the protein content of the starch granule is due to an effect of the interaction between surfactant and alkali, preventing the destruction of granules. All starches presented a degree of crystallinity between 21 and 28%. The internal structural changes of the starch granule were monitored by attenuated total reflectance - Fourier-transform infrared (ATR-FTIR) in the region of 990 to 1060 cm−1. Spectra showed significant differences between the peaks at 1032 and 1005 cm−1, corresponding to the crystalline/amorphous region of the starch structure. Changes in viscosity profiles were observed between 0.302 and 1.163 Pa s.


2015 ◽  
Vol 71 (11) ◽  
pp. 2236-2247 ◽  
Author(s):  
Cristiana M. Sousa ◽  
Philippe Carpentier ◽  
Pedro M. Matias ◽  
Fabrizio Testa ◽  
Filipa Pinho ◽  
...  

Superoxide reductase (SOR), which is commonly found in prokaryotic organisms, affords protection from oxidative stress by reducing the superoxide anion to hydrogen peroxide. The reaction is catalyzed at the iron centre, which is highly conserved among the prokaryotic SORs structurally characterized to date. Reported here is the first structure of an SOR from a eukaryotic organism, the protozoan parasiteGiardia intestinalis(GiSOR), which was solved at 2.0 Å resolution. By collecting several diffraction data sets at 100 K from the same flash-cooled protein crystal using synchrotron X-ray radiation, photoreduction of the iron centre was observed. Reduction was monitored using an online UV–visible microspectrophotometer, following the decay of the 647 nm absorption band characteristic of the iron site in the glutamate-bound, oxidized state. Similarly to other 1Fe-SORs structurally characterized to date, the enzyme displays a tetrameric quaternary-structure arrangement. As a distinctive feature, the N-terminal loop of the protein, containing the characteristic EKHxP motif, revealed an unusually high flexibility regardless of the iron redox state. At variance with previous evidence collected by X-ray crystallography and Fourier transform infrared spectroscopy of prokaryotic SORs, iron reduction did not lead to dissociation of glutamate from the catalytic metal or other structural changes; however, the glutamate ligand underwent X-ray-induced chemical changes, revealing high sensitivity of theGiSOR active site to X-ray radiation damage.


2018 ◽  
Vol 16 (2) ◽  
pp. 49-60
Author(s):  
Yohanes Vincent Mahendar Bagaskara ◽  
◽  
Yusfan Adeputera Yusran ◽  

Vernacular buildings in Indonesia, especially vernacular buildings of East Java, are increasingly diminishing. Many efforts have been made to maintain the existence of vernacular buildings, one of which is ex-situ conservation by re-using it adaptively as a tourist destination as found in Kampoeng Djawi Wonosalam. Translocation of vernacular buildings to new locations and new function causes changes in vernacular buildings, particularly in its structure. Changes occur as an adaption to new locations and new activities that will be accommodated. The objective of this paper is to describe the structural changes in vernacular buildings as the result of translocation. Qualitative descriptive method is used to find the structural changes, so the results obtained are actual facts. Changes that occur then analyzed with the concept of adaptive exoskeleton building. According to the results of observations and analysis, changes that occur in vernacular building translocation are caused by resilience, safety, and visual factors, as well as fulfillment of new activities.


2009 ◽  
Vol 12 (1) ◽  
pp. 9 ◽  
Author(s):  
Z.R. Ismagilov ◽  
E.V. Matus ◽  
I.Z. Ismagilov ◽  
M.A. Kerzhentsev ◽  
V.I. Zailovskii ◽  
...  

<p>The structure changes of Mo/ZSM-5 catalysts with different Mo content (2 and 10 wt. % Mo) and Si/Al atomic ratio (17, 30 and 45) during the methane dehydroaromatization have been investigated by X-ray powder diffractometry, N<sub>2</sub> adsorption and transmission electron microscopy. The treatment of Mo/ZSM-5 catalysts in reducing atmosphere (CH<sub>4</sub> or H<sub>2</sub>) at about 700 °C promotes development of mesoporous system. The pores are open to the exterior of the zeolite grain and have an entrance diameter of ~ 4-10 nm. It is proposed that mesopore formation in Mo/ZSM-5 catalyst is connected with the dealumination of zeolite. The mesopore formation in the parent H-ZSM-5 zeolite by NaOH treatment does not improve the activity of /ZSM-5 catalyst.</p>


2021 ◽  
Author(s):  
Michael W Itgen ◽  
Dustin S Siegel ◽  
Stanley K Sessions ◽  
Rachel Lockridge Mueller

Morphogenesis is an emergent property of biochemical and cellular interactions during development. Genome size and the correlated trait of cell size can influence these interactions through its effects on developmental rate and tissue geometry, ultimately driving the evolution of morphology. We tested the effects of genome size and body size evolution on heart and liver morphology using nine species of the salamander genus Plethodon (genome sizes 29.3-67 Gb). Our results show that whole organ size is determined by body size, whereas tissue structure changes dramatically with evolutionary increases in genome size. In the heart, increased genome size is correlated with a reduction of myocardia in the ventricle, yielding proportionally less force-producing mass and more empty space. In the liver, increased genome size is correlated with fewer and larger vascular structures, positioning hepatocytes farther from the circulatory vessels that transport key metabolites. Although these structural changes should have obvious impacts on organ function, their effects on organismal performance and fitness are likely negligible because low metabolic rates in salamanders relax selective pressure on key metabolic organ performance. Overall, this study reveals the effects of large genome and cell size on the developmental systems producing the heart and liver.


2013 ◽  
Vol 19 (2) ◽  
pp. 257-271 ◽  
Author(s):  
Byung-Sun Cho ◽  
Sang Sup Cho ◽  
Jungmann Lee

The structure of the IT industry has always evolved in line with technological progresses and changes in consumer preferences, as well as with regulatory trends. This is why, when assessing the effect that a new technology or industry policy may have on the national economy, companies and policy-makers need to consider dynamic structural changes affecting the IT industry. One of the most popular existing methods for economic impact analysis is based on a traditional input-output table, and is conducted over a period between the current time and a given time in the future. In this study, we compare the accuracy of RAS and Cross Entropy (CE), the two most widely employed methods for updating input-output (IO) tables, by applying them to Korean IT industries. The main results of this study are the following. In terms of the accuracy of input coefficient estimates, we have found that both the RAS and CE methods have a tendency to overestimate or underestimate them. When the Korean industry was first divided into fourteen sectors, and the RAS and CE methods were applied to each of the fourteen industries, it was difficult to discern a consistent trend for the two methods concerning their accuracy in estimation of input coefficients. Secondly, when used to update an IO table in which the IT industry is subdivided into IT equipment and services, neither the CE nor RAS method proved distinctly superior to the other. Third, in light of the above two findings, we concluded that updating IO tables is best done through a hybrid method combining the CE and RAS methods. This paper proposes a procedure consisting of two steps: IO tables are first updated using the two methods, which are once again updated by employing the OLS average approach through the use of optimal weights.


1973 ◽  
Vol 58 (3) ◽  
pp. 608-617 ◽  
Author(s):  
Yoshitaka Obara ◽  
Hiroshi Yoshida ◽  
Lee S. Chai ◽  
Herbert Weinfeld ◽  
Avery A. Sandberg

In Chinese hamster Don cells, fusion of an interphase cell with a metaphase cell resulted either in prophasing of the interphase nucleus, including loss of the nuclear envelope (NE), or in the formation of a double membrane around the metaphase chromosomes. Only one of these phenomena occurred in a given interphase-metaphase (I–M) binucleate cell. At pH 7.4, there was about an equal probability that either event could occur amongst the population of I–M cells. The effect of pH changes in the medium containing the fused cells was examined. At pH 6.6, prophasing was the predominant event; at pH 8.0, membrane formation predominated. It was found that the rate of progression of a mononucleate cell from G2 to metaphase was appreciably faster at pH 6.6 than at pH 8.0. Conversely, the progression from metaphase to G1 was faster at pH 8.0 than at pH 6.6. These results with the mononucleate cells strengthen the hypothesis that structural changes in I–M cells are reflections of normal mitotic phenomena. Additional evidence for this hypothesis was produced by electron microscope examination after direct fixation in chrom-osmium. The double membrane around the chromosomes of the I–M cell was indistinguishable from the normal NE. The results obtained by varying the pH of the medium containing the fused cells provide an indication that disruption or formation of the NE of Don cells depends on the balance reached between disruptive and formative processes.


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